Hello Noel, thanks a lot. I will try that!
I also tried OB 2.3.1 before, but that gave me another error: [100%] Building CXX object scripts/CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o <path>/openbabel-2.3.2/scripts/python/openbabel-python.cpp: In function 'PyObject* SWIG_From_unsigned_SS_int(unsigned int)': <path>/openbabel-2.3.2/scripts/python/openbabel-python.cpp:5037: error: 'PyInt_FromSize_t' was not declared in this scope make[2]: *** [scripts/CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o] Error 1 make[1]: *** [scripts/CMakeFiles/bindings_python.dir/all] Error 2 make: *** [all] Error 2 That's why I chose the older version hoping to omit the problem ;) Cheers, Charlotta On Dec 21, 2012, at 12:46 PM, Noel O'Boyle wrote: > You have confused CMake by using the same value for > CMAKE_INSTALL_PREFIX as your build directory. Instead try > -DCMAKE_INSTALL_PREFIX=<path>/openbabel-2.3.1/install. Ditto for the > PYTHON_PREFIX. Actually, if I were you I would go with the default, > -DPYTHON_PREFIX= > > By the way, you should probably use OB 2.3.2 instead of OB 2.3.1. > > - Noel > > > On 21 December 2012 09:41, Charlotta Schärfe > <schae...@informatik.uni-tuebingen.de> wrote: >> Hi everyone, >> >> I'm not quite sure if this is the correct place to ask my question, but I >> couldn't find any help on google - so here I am! >> >> On most of my systems openbabel works perfectly fine (compiled by myself and >> taken from yum/apt-get). >> However, I am now trying to install the python bindings for OpenBabel 2.3.1 >> on a CentOS5 system. Unfortunately the bindings I could get from yum are >> only for an older version so I wanted to compile everything by myself. >> Until I reach make install everything looks good, but then I get an error I >> never encountered before. >> >> So here is what works: >> mkdir build >> cd build >> cmake .. -DPYTHON_BINDINGS=ON -DPYTHON_PREFIX=<path>/openbabel-2.3.1/build >> -DCMAKE_INSTALL_PREFIX=<path>/openbabel-2.3.1/build -DRUN_SWIG=ON >> -DSWIG_EXECUTABLE=/<path>/swig-2.0.9/build/swig >> --- then edit the CMakeCache to have proper path to eigen2, >> -DEIGEN2_INCLUDE_DIR doesn't really work, somehow) >> make -j4 >> >> where <path> is the path to my homedirectory. >> >> I then get my folders with the following libraries (among others) in the >> <path>/openbabel-2.3.1/build/lib/ dir: >> libinchi.so -> libinchi.so.0 >> libinchi.so.0 -> libinchi.so.0.3.1 >> libinchi.so.0.3.1 >> libopenbabel.so -> libopenbabel.so.4 >> libopenbabel.so.4 -> libopenbabel.so.4.0.1 >> libopenbabel.so.4.0.1 >> >> If I then do 'make install', I get the following errors: >> CMake Error at src/cmake_install.cmake:48 (FILE): >> file INSTALL cannot find >> "<path>/openbabel-2.3.1/build/lib/libopenbabel.so.4.0.1". >> Call Stack (most recent call first): >> cmake_install.cmake:75 (INCLUDE) >> >> and >> >> CMake Error at src/formats/inchi103/cmake_install.cmake:48 (FILE): >> file INSTALL cannot find >> "<path>/openbabel-2.3.1/build/lib/libinchi.so.0.3.1". >> Call Stack (most recent call first): >> src/formats/cmake_install.cmake:2017 (INCLUDE) >> src/cmake_install.cmake:173 (INCLUDE) >> cmake_install.cmake:75 (INCLUDE) >> >> And if I check the library dir again, the both files are indeed not there >> ALTHOUGH they were there before I started the install process. How can this >> happen? >> >> I am not very familiar with CMake so can anyone help me fix this problem or >> tell me how I can install the python-bindings in a different way on CentOS5? >> >> Thanks a lot for you help. >> Cheers, >> Charlotta >> >> >> --- >> Charlotta Schärfe >> Eberhard Karls University Tübingen >> Applied Bioinformatics Group >> Phone: +49 (0)7071 29-70462 >> schae...@informatik.uni-tuebingen.de >> >> >> >> >> >> >> >> ------------------------------------------------------------------------------ >> LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial >> Remotely access PCs and mobile devices and provide instant support >> Improve your efficiency, and focus on delivering more value-add services >> Discover what IT Professionals Know. Rescue delivers >> http://p.sf.net/sfu/logmein_12329d2d >> _______________________________________________ >> OpenBabel-discuss mailing list >> OpenBabel-discuss@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/openbabel-discuss >> ------------------------------------------------------------------------------ LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial Remotely access PCs and mobile devices and provide instant support Improve your efficiency, and focus on delivering more value-add services Discover what IT Professionals Know. Rescue delivers http://p.sf.net/sfu/logmein_12329d2d _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
