There is an undocumented option in molecule.write() and .readfile() which
allows of passing options to reading/writing. You must pass opt with
dictionary of options. For line you gave: opt = {'b' : None, 'i' : None,
'a' : None} although I believe that 'b' : None should be 'b' : '' if you
wish to pass empty value, since None is reserved for options without value.
You could look into that in pybel.py file.
----
Pozdrawiam, | Best regards,
Maciek Wójcikowski
mac...@wojcikowski.pl
2013/6/5 Dimitri Maziuk <dmaz...@bmrb.wisc.edu>
> Hi everyone,
>
> one more python question: I'm trying to do
>
> obabel -h --canonical -xb none -xi -xa -xP1000 -osvg ...
>
> All I can see in TFM is pybel.Molecule.addh() for "-h" -- is there way
> to get to the rest? Specifically, "-xa" and "-xi", as I can
> post-process the SVG to change the size and the background.
>
> TIA
> --
> Dimitri Maziuk
> Programmer/sysadmin
> BioMagResBank, UW-Madison -- http://www.bmrb.wisc.edu
>
>
>
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