Hi All, I'm attempting to convert either .mol2 or .sdf to .smi from the zinc database.
Using the openbabel GUI, simply opening a file (which contains >100k compounds) crashes the GUI. On command line, entering obabel -imol2 'filename.mol2' -osmi 'filename.smi' Around 40 lines of output are written in the terminal, when I get the message "Segmentation Fault" entering obabel -isdf 'filename.sdf' -osmi 'filename.smi' I get 'cannot open file 'filename.sdf'' Solutions to ANY of these? -- View this message in context: http://forums.openbabel.org/GUI-Crashes-Command-line-errors-tp4656503.html Sent from the General discussion mailing list archive at Nabble.com. ------------------------------------------------------------------------------ See everything from the browser to the database with AppDynamics Get end-to-end visibility with application monitoring from AppDynamics Isolate bottlenecks and diagnose root cause in seconds. Start your free trial of AppDynamics Pro today! http://pubads.g.doubleclick.net/gampad/clk?id=48808831&iu=/4140/ostg.clktrk _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
