Can you point us to which file from ZINC? -David
On Jul 22, 2013, at 7:03 PM, JHela001 <jhela...@ucr.edu> wrote: > Hi All, > > I'm attempting to convert either .mol2 or .sdf to .smi from the zinc > database. > > Using the openbabel GUI, simply opening a file (which contains >100k > compounds) crashes the GUI. > > On command line, > > entering > obabel -imol2 'filename.mol2' -osmi 'filename.smi' > > Around 40 lines of output are written in the terminal, when I get the > message > "Segmentation Fault" > > entering > obabel -isdf 'filename.sdf' -osmi 'filename.smi' > I get 'cannot open file 'filename.sdf'' > > Solutions to ANY of these? > > > > -- > View this message in context: > http://forums.openbabel.org/GUI-Crashes-Command-line-errors-tp4656503.html > Sent from the General discussion mailing list archive at Nabble.com. > > ------------------------------------------------------------------------------ > See everything from the browser to the database with AppDynamics > Get end-to-end visibility with application monitoring from AppDynamics > Isolate bottlenecks and diagnose root cause in seconds. > Start your free trial of AppDynamics Pro today! > http://pubads.g.doubleclick.net/gampad/clk?id=48808831&iu=/4140/ostg.clktrk > _______________________________________________ > OpenBabel-discuss mailing list > OpenBabel-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss ------------------------------------------------------------------------------ See everything from the browser to the database with AppDynamics Get end-to-end visibility with application monitoring from AppDynamics Isolate bottlenecks and diagnose root cause in seconds. Start your free trial of AppDynamics Pro today! http://pubads.g.doubleclick.net/gampad/clk?id=48808831&iu=/4140/ostg.clktrk _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
