Hello, I’ve been having trouble converting between formats. I have generated some MOL files using RDKit for various substituted subphthalocyanines (attached below) which, when opened with any molecule viewer, show the correct bond order (1 or 2 depending on the atom) between the nitrogen and carbon atoms surrounding the central boron. However, when I convert to any other format (such as PDB or XYZ) with OpenBabel, the bond order between each nitrogen atom and the adjacent carbon atom is reduced to 1.
Is there an option that I haven’t included that can solve this problem, or is this a bug that hasn’t been addressed? Any help would be appreciated. Thanks, Biruk
ULIWKVYKBWIIEK-UHFFFAOYSA-N_0.mol
Description: MOL mdl chemical test
HHZNZQDCTKUBQG-UHFFFAOYSA-N_0.mol
Description: MOL mdl chemical test
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