I'm not able to compress output files when using the python API.
I'm using code like this:
import openbabel
obConversion = openbabel.OBConversion()
obConversion.SetInAndOutFormats("pdb", "mol2")
mol = openbabel.OBMol()
obConversion.ReadFile(mol, "input.pdb.gz")
obConversion.AddOption("z")
obConversion.WriteFile(mol, "output.mol2.gz")
The file is written but it's not gzipped.
Using the -z option of the CLI works fine.
This is with version 2.4.1 on Linux.
Tim
_______________________________________________
OpenBabel-discuss mailing list
OpenBabel-discuss@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
