Forwarding the answer back to the list. On 11/04/2019 14:41, Andrew Dalke wrote:
Ahh, look like I read the pybel code wrong.When I get confused about the OB API, I look there first to see how Noel did it. Here's the relevant code: if filename: if isinstance(filename, bytes): gzextension = b'.gz' else: gzextension = '.gz' if os.path.splitext(filename)[1] == gzextension: self.obconversion.AddOption('z', self.obConversion.GENOPTIONS) So, try obConversion.GENOPTIONS ? Andrew da...@dalkescientific.comOn Apr 11, 2019, at 15:31, Tim Dudgeon <tdudgeon...@gmail.com> wrote: Unfortunately that doesn't work either. Still writes uncompressed. On 11/04/2019 14:15, Andrew Dalke wrote:obConversion.AddOption("z")Try:obConversion.AddOption("z", obConversion.OUTOPTIONS)Andrew da...@dalkescientific.com
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