Hello,
After a long hiatus I got back on this project. After following the
instructions I successfully installed openbabel/pybel.
However, when I tried testing the program I got a funny error, "pdb is not a
recognised OpenBabel format".
Enthought Python Distribution -- www.enthought.com
Version: 7.1-1 (64-bit)
Python 2.7.2 |EPD 7.1-1 (64-bit)| (default, Jul 3 2011, 15:56:02)
[GCC 4.0.1 (Apple Inc. build 5493)] on darwin
Type "packages", "demo" or "enthought" for more information.
>>> import pybel as pb
>>> testmolecule = pb.readfile("pdb","mai.pdb").next()
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File
"/Users/sindhikara/Tools/openbabel-install/lib/python2.7/site-packages/pybel.py",
line 90, in readfile
raise ValueError("%s is not a recognised OpenBabel format" % format)
ValueError: pdb is not a recognised OpenBabel format
Further, checking the formats variable:
>>> pb.informats
{}
It was empty.
Any clues into why this would happen?
Thanks in advance!
-Dan
--
Dr. Daniel J. Sindhikara
Institute for Molecular Science
E-mail: [email protected]
Website: http://sites.google.com/site/dansindhikara/
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