Does "obabel -H pdb" show the PDB format? On 6 September 2011 07:16, Daniel Sindhikara <[email protected]> wrote: > Hello, > After a long hiatus I got back on this project. After following the > instructions I successfully installed openbabel/pybel. > However, when I tried testing the program I got a funny error, "pdb is not a > recognised OpenBabel format". > > Enthought Python Distribution -- www.enthought.com > Version: 7.1-1 (64-bit) > > Python 2.7.2 |EPD 7.1-1 (64-bit)| (default, Jul 3 2011, 15:56:02) > [GCC 4.0.1 (Apple Inc. build 5493)] on darwin > Type "packages", "demo" or "enthought" for more information. >>>> import pybel as pb >>>> testmolecule = pb.readfile("pdb","mai.pdb").next() > Traceback (most recent call last): > File "<stdin>", line 1, in <module> > File > "/Users/sindhikara/Tools/openbabel-install/lib/python2.7/site-packages/pybel.py", > line 90, in readfile > raise ValueError("%s is not a recognised OpenBabel format" % format) > ValueError: pdb is not a recognised OpenBabel format > > > Further, checking the formats variable: >>>> pb.informats > {} > > It was empty. > Any clues into why this would happen? > > Thanks in advance! > -Dan > > > -- > Dr. Daniel J. Sindhikara > Institute for Molecular Science > E-mail: [email protected] > Website: http://sites.google.com/site/dansindhikara/ > -- > > ------------------------------------------------------------------------------ > Special Offer -- Download ArcSight Logger for FREE! > Finally, a world-class log management solution at an even better > price-free! And you'll get a free "Love Thy Logs" t-shirt when you > download Logger. Secure your free ArcSight Logger TODAY! > http://p.sf.net/sfu/arcsisghtdev2dev > _______________________________________________ > OpenBabel-scripting mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/openbabel-scripting > >
------------------------------------------------------------------------------ Special Offer -- Download ArcSight Logger for FREE! Finally, a world-class log management solution at an even better price-free! And you'll get a free "Love Thy Logs" t-shirt when you download Logger. Secure your free ArcSight Logger TODAY! http://p.sf.net/sfu/arcsisghtdev2dev _______________________________________________ OpenBabel-scripting mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/openbabel-scripting
