The MOSES-for-supervised-learning stuff is a bit specialized, and doesn't use the main OpenCog codebase, MOSES is a standalone system
However Nil wrote code for importing learned MOSES models into the Atomspace, and once you've done that you can play with PLN inference or other tools for combining MOSES models w/ other knowledge A great project for a brave soul right now would be -- run MOSES on some categorial SNP or gene expression data to get a big diverse model ensemble -- load these models into Atomspace -- use Nil's new Pattern Miner to find surprising patterns among the MOSES models Then one could bring PLN into the story to integrate, say, Gene Ontology into the surprisingness assessment... ben On Sat, Mar 2, 2019 at 7:41 AM Abu Naser <[email protected]> wrote: > > Hi Ben, > > Thank your for responding my queries. I will try to find the papers and > guessing you are one of the authors of the papers. It would be very useful > for me if I could get Bioinfromatics related toy examples to play around, > which will help me to get to know the opencog code. Hope Mike will point me > to one of those example code. > > With kind regards, > > Abu > > On Fri, 1 Mar 2019 at 23:14, Ben Goertzel <[email protected]> wrote: >> >> There are two pieces to what we've been doing w/ OpenCog for bioinformatics >> >> 1) supervised classification of genomics datasets (e.g. SNPs, gene >> expression) using MOSES >> >> 2) integration of various ontologies into the Atomspace, import of >> MOSES classification models into the Atomspace, and use of PLN >> reasoning (currently on a pretty ad hoc, human guided basis) to do >> inference based on this combined data >> >> There are publications on both of these things, though I don't have >> time to dig up the URL right now, and Mike can point you to the >> code... >> >> ben >> >> On Sat, Mar 2, 2019 at 5:51 AM Linas Vepstas <[email protected]> wrote: >> > >> > Hi, >> > >> > Opencog has many parts to it.There is an agi-bio part for bioinformatics >> > but it seems slim, and I think the main part of that system is somewhere >> > else. I'm hoping Mike Duncan can respond in more detail. >> > >> > --linas >> > >> > On Fri, Mar 1, 2019 at 1:15 PM Abu Naser <[email protected]> wrote: >> >> >> >> Hello Everyone, >> >> >> >> I have just installed opencog on Ubuntu. I am a biologist and wish to use >> >> opencog for solving biological problems. I have been wondering whether >> >> there is any tutorial related to Bioinformatics. Please let me know. >> >> >> >> With best regards, >> >> >> >> Abu >> >> >> >> -- >> >> You received this message because you are subscribed to the Google Groups >> >> "opencog" group. >> >> To unsubscribe from this group and stop receiving emails from it, send an >> >> email to [email protected]. >> >> To post to this group, send email to [email protected]. >> >> Visit this group at https://groups.google.com/group/opencog. >> >> To view this discussion on the web visit >> >> https://groups.google.com/d/msgid/opencog/b91a8dda-25db-48ea-80ed-776fed30dea6%40googlegroups.com. >> >> For more options, visit https://groups.google.com/d/optout. >> > >> > >> > >> > -- >> > cassette tapes - analog TV - film cameras - you >> > >> > -- >> > You received this message because you are subscribed to the Google Groups >> > "opencog" group. >> > To unsubscribe from this group and stop receiving emails from it, send an >> > email to [email protected]. >> > To post to this group, send email to [email protected]. >> > Visit this group at https://groups.google.com/group/opencog. >> > To view this discussion on the web visit >> > https://groups.google.com/d/msgid/opencog/CAHrUA34wuXH1z%3DiDwE9_HX7%2BN04SPyTHjzSp8hKPR6%2Bgih1rXA%40mail.gmail.com. >> > For more options, visit https://groups.google.com/d/optout. >> >> >> >> -- >> Ben Goertzel, PhD >> http://goertzel.org >> >> "Listen: This world is the lunatic's sphere, / Don't always agree >> it's real. / Even with my feet upon it / And the postman knowing my >> door / My address is somewhere else." -- Hafiz >> >> -- >> You received this message because you are subscribed to the Google Groups >> "opencog" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at https://groups.google.com/group/opencog. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/opencog/CACYTDBe4hX_MK2x2wXRmZ6ZiVqGO5Q48FC%3DJoyPYWAUYOv3VBQ%40mail.gmail.com. >> For more options, visit https://groups.google.com/d/optout. > > -- > You received this message because you are subscribed to the Google Groups > "opencog" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/opencog. > To view this discussion on the web visit > https://groups.google.com/d/msgid/opencog/CAMw3wdhhdkdNMGLGPxf0aRZOG9VkaU05sNdc87%2B7TOYYiZi0tg%40mail.gmail.com. > For more options, visit https://groups.google.com/d/optout. -- Ben Goertzel, PhD http://goertzel.org "Listen: This world is the lunatic's sphere, / Don't always agree it's real. / Even with my feet upon it / And the postman knowing my door / My address is somewhere else." -- Hafiz -- You received this message because you are subscribed to the Google Groups "opencog" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/opencog. To view this discussion on the web visit https://groups.google.com/d/msgid/opencog/CACYTDBf4tv8-sJ9FV%3DFbGwb9ny3GbZ%3DYRZWSS%2BbpKCjOYnBKpw%40mail.gmail.com. For more options, visit https://groups.google.com/d/optout.
