Hi Romain,
It was a stupid error, a comma missing just before the wallTime, now solved.
I have also installed the version 5.9 on the front-end of the cluster.
But I get the following problems when I try to run my script :
(The log file indicated at the last line does not exist in that folder (the
folder itself does not exists in fact)
/ _ \ _ __ ___ _ __ | \/ |/ _ \| | | ____| | ___|
| | | | '_ \ / _ \ '_ \| |\/| | | | | | | _| |___ \
| |_| | |_) | __/ | | | | | | |_| | |___| |___ ___) |
\___/| .__/ \___|_| |_|_| |_|\___/|_____|_____| |____/
|_|
(Type :q to quit)
warning: there were two deprecation warnings; re-run with -deprecation for
details
warning: there were 58 feature warnings; re-run with -feature for details
!SESSION 2015-11-05 10:21:21.123
-----------------------------------------------
eclipse.buildId=unknown
java.version=1.7.0_03
java.vendor=Oracle Corporation
BootLoader constants: OS=linux, ARCH=x86_64, WS=gtk, NL=fr_FR
Framework arguments: -cp /home/yildi/openmole/openmole-plugins -gp
/home/yildi/openmole/openmole-plugins-gui -s ./vdmy5avakas.oms -pw lokum
Command-line arguments: -consoleLog -cp
/home/yildi/openmole/openmole-plugins -gp
/home/yildi/openmole/openmole-plugins-gui -s ./vdmy5avakas.oms -pw lokum
!ENTRY org.eclipse.osgi 4 0 2015-11-05 10:21:46.518
!MESSAGE Application error
!STACK 1
java.lang.OutOfMemoryError: unable to create new native thread
at java.lang.Thread.start0(Native Method)
at java.lang.Thread.start(Thread.java:691)
at
org.openmole.core.batch.refresh.JobManager$$anonfun$1.apply(JobManager.scala:68)
at
org.openmole.core.batch.refresh.JobManager$$anonfun$1.apply(JobManager.scala:61)
at scala.collection.immutable.Range.foreach(Range.scala:166)
at
org.openmole.core.batch.refresh.JobManager.<init>(JobManager.scala:61)
at
org.openmole.core.batch.environment.BatchEnvironment$.jobManager$lzycompute(BatchEnvironment.scala:133)
at
org.openmole.core.batch.environment.BatchEnvironment$.jobManager(BatchEnvironment.scala:133)
at
org.openmole.core.batch.environment.BatchEnvironment$class.submit(BatchEnvironment.scala:192)
at
org.openmole.plugin.environment.pbs.PBSEnvironment.submit(PBSEnvironment.scala:69)
at org.openmole.core.workflow.mole.MoleExecution.org
$openmole$core$workflow$mole$MoleExecution$$submit(MoleExecution.scala:150)
at
org.openmole.core.workflow.mole.MoleExecution$$anonfun$group$2.apply(MoleExecution.scala:145)
at
org.openmole.core.workflow.mole.MoleExecution$$anonfun$group$2.apply(MoleExecution.scala:145)
at scala.Option.map(Option.scala:146)
at
org.openmole.core.workflow.mole.MoleExecution.group(MoleExecution.scala:145)
at
org.openmole.core.workflow.mole.SubMoleExecution.submit(SubMoleExecution.scala:231)
at
org.openmole.core.workflow.transition.ITransition$class.submitNextJobsIfReady(ITransition.scala:115)
at
org.openmole.core.workflow.transition.ExplorationTransition.submitNextJobsIfReady(ExplorationTransition.scala:31)
at
org.openmole.core.workflow.transition.ExplorationTransition$$anonfun$submitIn$1.apply(ExplorationTransition.scala:65)
at
org.openmole.core.workflow.transition.ExplorationTransition$$anonfun$submitIn$1.apply(ExplorationTransition.scala:49)
at scala.collection.immutable.List.foreach(List.scala:381)
at
org.openmole.core.workflow.transition.ExplorationTransition.submitIn(ExplorationTransition.scala:49)
at
org.openmole.core.workflow.transition.ExplorationTransition$$anonfun$perform$1.apply$mcV$sp(ExplorationTransition.scala:37)
at
org.openmole.core.workflow.transition.ExplorationTransition$$anonfun$perform$1.apply(ExplorationTransition.scala:37)
at
org.openmole.core.workflow.transition.ExplorationTransition$$anonfun$perform$1.apply(ExplorationTransition.scala:37)
at org.openmole.tool.lock.package$LockDecorator.apply(package.scala:28)
at
org.openmole.core.workflow.transition.ExplorationTransition.perform(ExplorationTransition.scala:37)
at
org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$jobFinished$1$$anonfun$apply$mcV$sp$3.apply(SubMoleExecution.scala:149)
at
org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$jobFinished$1$$anonfun$apply$mcV$sp$3.apply(SubMoleExecution.scala:149)
at scala.collection.immutable.List.foreach(List.scala:381)
at
org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$jobFinished$1.apply$mcV$sp(SubMoleExecution.scala:149)
at
org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$jobFinished$1.apply(SubMoleExecution.scala:149)
at
org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$jobFinished$1.apply(SubMoleExecution.scala:149)
at org.openmole.tool.lock.package$LockDecorator.apply(package.scala:28)
at
org.openmole.core.workflow.mole.SubMoleExecution.jobFinished(SubMoleExecution.scala:148)
at
org.openmole.core.workflow.mole.SubMoleExecution.finalState(SubMoleExecution.scala:266)
at org.openmole.core.workflow.mole.SubMoleExecution.org
$openmole$core$workflow$mole$SubMoleExecution$$stateChanged$2(SubMoleExecution.scala:225)
at
org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$11.apply(SubMoleExecution.scala:228)
at
org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$11.apply(SubMoleExecution.scala:228)
at
org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1$$anonfun$apply$1$$anonfun$apply$2.apply(LocalExecutor.scala:80)
at
org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1$$anonfun$apply$1$$anonfun$apply$2.apply(LocalExecutor.scala:78)
nov. 05, 2015 10:21:46 AM org.openmole.core.updater.UpdaterTask run
Avertissement: null
java.lang.OutOfMemoryError: unable to create new native thread
at java.lang.Thread.start0(Native Method)
at java.lang.Thread.start(Thread.java:691)
at
java.util.concurrent.ThreadPoolExecutor.addWorker(ThreadPoolExecutor.java:943)
at
java.util.concurrent.ThreadPoolExecutor.prestartCoreThread(ThreadPoolExecutor.java:1544)
at
java.util.concurrent.ScheduledThreadPoolExecutor.delayedExecute(ScheduledThreadPoolExecutor.java:333)
at
java.util.concurrent.ScheduledThreadPoolExecutor.schedule(ScheduledThreadPoolExecutor.java:530)
at org.openmole.core.updater.Updater$.delay(Updater.scala:49)
at org.openmole.core.updater.UpdaterTask.run(UpdaterTask.scala:29)
at
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
at java.lang.Thread.run(Thread.java:722)
at
org.openmole.core.workflow.job.MoleJob.signalChanged(MoleJob.scala:90)
at org.openmole.core.workflow.job.MoleJob.state_$eq(MoleJob.scala:94)
at org.openmole.core.workflow.job.MoleJob.perform(MoleJob.scala:101)
at
org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1$$anonfun$apply$1.apply(LocalExecutor.scala:83)
at
org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1$$anonfun$apply$1.apply(LocalExecutor.scala:64)
at scala.collection.immutable.List.foreach(List.scala:381)
at
org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1.apply(LocalExecutor.scala:64)
at
org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1.apply(LocalExecutor.scala:61)
at
org.openmole.core.workflow.execution.local.LocalExecutor.withRedirectedOutput(LocalExecutor.scala:126)
at
org.openmole.core.workflow.execution.local.LocalExecutor.run(LocalExecutor.scala:61)
at java.lang.Thread.run(Thread.java:722)
An error has occurred. See the log file
*/home/yildi/.openmole/.tmp/1446715280_1251/1446715281608.log.*
2015-11-05 5:01 GMT+01:00 Romain Reuillon <[email protected]>:
> Could you provide the corresponding oms ?
>
>
> Le 05/11/2015 00:40, Murat Yildizoglu a écrit :
>
> Hi Romain,
>
> When I do this, I get another error in the console (while this instruction
> seems to works without any problem when I launch this model from the web
> interface:
>
> ___ __ __ ___ _ _____ ____
> / _ \ _ __ ___ _ __ | \/ |/ _ \| | | ____| | ___|
> | | | | '_ \ / _ \ '_ \| |\/| | | | | | | _| |___ \
> | |_| | |_) | __/ | | | | | | |_| | |___| |___ ___) |
> \___/| .__/ \___|_| |_|_| |_|\___/|_____|_____| |____/
> |_|
> (Type :q to quit)
> <console>:248: error: value wallTime is not a member of String
> possible cause: maybe a semicolon is missing before `value wallTime'?
> wallTime=1 hours,
> ^
> <console>:379: error: value wallTime is not a member of String
> possible cause: maybe a semicolon is missing before `value wallTime'?
> wallTime=1 hours,
> ^
> org.openmole.core.exception.UserBadDataError: Compilation error:
> value wallTime is not a member of String
> possible cause: maybe a semicolon is missing before `value wallTime'?
> wallTime=1 hours,
> ^
> on line 248
> Compilation error:
> value wallTime is not a member of String
> possible cause: maybe a semicolon is missing before `value wallTime'?
> wallTime=1 hours,
> ^
> on line 379
>
> at
> org.openmole.core.console.ScalaREPL.messageToException(ScalaREPL.scala:74)
> at org.openmole.core.console.ScalaREPL.compile(ScalaREPL.scala:92)
> at org.openmole.console.Project.compile(Project.scala:64)
> at org.openmole.console.Project.compile(Project.scala:58)
> at org.openmole.console.Console.run(Console.scala:159)
> at
> org.openmole.ui.Application$$anonfun$start$1.apply(Application.scala:184)
> at
> org.openmole.ui.Application$$anonfun$start$1.apply(Application.scala:60)
> at
> org.openmole.core.replication.DBServerRunning$.useDB(DBServerRunning.scala:42)
> at org.openmole.ui.Application.start(Application.scala:60)
> at org.openmole.ui.Application.start(Application.scala:47)
> at
> org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
> at
> org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110)
> at
> org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79)
> at
> org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:353)
> at
> org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:180)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:601)
> at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:629)
> at org.eclipse.equinox.launcher.Main.basicRun(Main.java:584)
> at org.eclipse.equinox.launcher.Main.run(Main.java:1438)
> at org.eclipse.equinox.launcher.Main.main(Main.java:1414)
>
> 2015-11-04 18:59 GMT+01:00 Romain Reuillon <[email protected]>:
>
>> Hi Murat,
>>
>> if you rename your file with no dash in it, it will work,
>>
>> I keep that in mind to make it more robust at some point....
>>
>> Romain
>>
>>
>>
>> Le 04/11/2015 16:38, Murat Yildizoglu a écrit :
>>
>> Hi,
>>
>> I have been able to make the experiment index working thanks to your
>> indications.
>> I must say that the Samples page is not very helpful on this and I could
>> not make it without your help. Thanks a lot!
>>
>> Now that everything works on my laptop, and on the cluster from my
>> laptop, I would like to launch my simulations directly from the front-end
>> of the cluster, while being able to disconnect from it and let it run.
>>
>> Of course what I need is the headless version of the script.
>> Unfortunately, when I run the command given on the web page
>>
>> ./openmole -s /path/to/your/mole/script -pw password
>>
>> using my path, my script and my password, OM Console opens and complains
>> that the namr of my script is not a command
>>
>> (Type :q to quit)
>> <console>:2: error: ';' expected but identifier found.
>> class vdmy4-avakasClass {
>> ^
>> <console>:213: error: illegal start of simple expression
>> )
>> ^
>> <console>:261: error: ')' expected but '}' found.
>> }
>> ^
>> org.openmole.core.exception.UserBadDataError: Compilation error:
>> ';' expected but identifier found.
>> class vdmy4-avakasClass {
>>
>>
>> Is this -s switch correct? Why it is launching the console instead of
>> running my script?
>>
>>
>> --
>> Prof. Murat Yildizoglu
>>
>> Note: Please use the following address as such
>>
>> UNIVERSITE DE BORDEAUX
>> GREThA (UMR CNRS 5113)
>> MURAT YILDIZOGLU
>> 16 AVENUE LEON DUGUIT
>> CS 50057
>> 33608 PESSAC CEDEX
>> FRANCE
>>
>> Bureau : E-331
>>
>> mail: murat.yildizoglu at u-bordeaux.fr
>>
>> web: <http://www.yildizoglu.fr>www.yildizoglu.fr
>>
>>
>> _______________________________________________
>> OpenMOLE-users mailing
>> [email protected]http://fedex.iscpif.fr/mailman/listinfo/openmole-users
>>
>>
>>
>> _______________________________________________
>> OpenMOLE-users mailing list
>> [email protected]
>> http://fedex.iscpif.fr/mailman/listinfo/openmole-users
>>
>>
>
>
> --
> Prof. Murat Yildizoglu
>
> Note: Please use the following address as such
>
> UNIVERSITE DE BORDEAUX
> GREThA (UMR CNRS 5113)
> MURAT YILDIZOGLU
> 16 AVENUE LEON DUGUIT
> CS 50057
> 33608 PESSAC CEDEX
> FRANCE
>
> Bureau : E-331
>
> mail: murat.yildizoglu at u-bordeaux.fr
>
> web: www.yildizoglu.fr
>
>
> _______________________________________________
> OpenMOLE-users mailing
> [email protected]http://fedex.iscpif.fr/mailman/listinfo/openmole-users
>
>
>
> _______________________________________________
> OpenMOLE-users mailing list
> [email protected]
> http://fedex.iscpif.fr/mailman/listinfo/openmole-users
>
>
--
Prof. Murat Yildizoglu
Note: Please use the following address as such
UNIVERSITE DE BORDEAUX
GREThA (UMR CNRS 5113)
MURAT YILDIZOGLU
16 AVENUE LEON DUGUIT
CS 50057
33608 PESSAC CEDEX
FRANCE
Bureau : E-331
mail: murat.yildizoglu at u-bordeaux.fr
web: www.yildizoglu.fr
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