Hi Murat,
did you try to set a smaller value for OpenMOLEMemory (or without
specifying this variable) ?
Mathieu
Le 05/11/2015 21:47, Murat Yildizoglu a écrit :
When I try to execute my mole on the cluster through a SSH connection,
I get the following error again.
I attach my script to this message.
And the log message indicated at the end of the error message does not
exist.
(Type :q to quit)
warning: there were two deprecation warnings; re-run with -deprecation
for details
warning: there were 58 feature warnings; re-run with -feature for details
!SESSION 2015-11-05 21:42:09.360
-----------------------------------------------
eclipse.buildId=unknown
java.version=1.7.0_03
java.vendor=Oracle Corporation
BootLoader constants: OS=linux, ARCH=x86_64, WS=gtk, NL=fr_FR
Framework arguments: -cp /home/yildi/openmole/openmole-plugins -gp
/home/yildi/openmole/openmole-plugins-gui -s ./vdmy5avakas.oms -pw lokum
Command-line arguments: -consoleLog -cp
/home/yildi/openmole/openmole-plugins -gp
/home/yildi/openmole/openmole-plugins-gui -s ./vdmy5avakas.oms -pw lokum
!ENTRY org.eclipse.osgi 4 0 2015-11-05 21:42:47.778
!MESSAGE Application error
!STACK 1
java.lang.OutOfMemoryError: unable to create new native thread
at java.lang.Thread.start0(Native Method)
at java.lang.Thread.start(Thread.java:691)
at
org.openmole.core.batch.refresh.JobManager$$anonfun$1.apply(JobManager.scala:68)
at
org.openmole.core.batch.refresh.JobManager$$anonfun$1.apply(JobManager.scala:61)
at scala.collection.immutable.Range.foreach(Range.scala:166)
at
org.openmole.core.batch.refresh.JobManager.<init>(JobManager.scala:61)
at
org.openmole.core.batch.environment.BatchEnvironment$.jobManager$lzycompute(BatchEnvironment.scala:133)
at
org.openmole.core.batch.environment.BatchEnvironment$.jobManager(BatchEnvironment.scala:133)
at
org.openmole.core.batch.environment.BatchEnvironment$class.submit(BatchEnvironment.scala:192)
at
org.openmole.plugin.environment.pbs.PBSEnvironment.submit(PBSEnvironment.scala:69)
at org.openmole.core.workflow.mole.MoleExecution.org
<http://org.openmole.core.workflow.mole.MoleExecution.org>$openmole$core$workflow$mole$MoleExecution$$submit(MoleExecution.scala:150)
at
org.openmole.core.workflow.mole.MoleExecution$$anonfun$group$2.apply(MoleExecution.scala:145)
at
org.openmole.core.workflow.mole.MoleExecution$$anonfun$group$2.apply(MoleExecution.scala:145)
at scala.Option.map(Option.scala:146)
at
org.openmole.core.workflow.mole.MoleExecution.group(MoleExecution.scala:145)
at
org.openmole.core.workflow.mole.SubMoleExecution.submit(SubMoleExecution.scala:231)
at
org.openmole.core.workflow.transition.ITransition$class.submitNextJobsIfReady(ITransition.scala:115)
at
org.openmole.core.workflow.transition.ExplorationTransition.submitNextJobsIfReady(ExplorationTransition.scala:31)
at
org.openmole.core.workflow.transition.ExplorationTransition$$anonfun$submitIn$1.apply(ExplorationTransition.scala:65)
at
org.openmole.core.workflow.transition.ExplorationTransition$$anonfun$submitIn$1.apply(ExplorationTransition.scala:49)
at scala.collection.immutable.List.foreach(List.scala:381)
at
org.openmole.core.workflow.transition.ExplorationTransition.submitIn(ExplorationTransition.scala:49)
at
org.openmole.core.workflow.transition.ExplorationTransition$$anonfun$perform$1.apply$mcV$sp(ExplorationTransition.scala:37)
at
org.openmole.core.workflow.transition.ExplorationTransition$$anonfun$perform$1.apply(ExplorationTransition.scala:37)
at
org.openmole.core.workflow.transition.ExplorationTransition$$anonfun$perform$1.apply(ExplorationTransition.scala:37)
at
org.openmole.tool.lock.package$LockDecorator.apply(package.scala:28)
at
org.openmole.core.workflow.transition.ExplorationTransition.perform(ExplorationTransition.scala:37)
at
org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$jobFinished$1$$anonfun$apply$mcV$sp$3.apply(SubMoleExecution.scala:149)
at
org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$jobFinished$1$$anonfun$apply$mcV$sp$3.apply(SubMoleExecution.scala:149)
at scala.collection.immutable.List.foreach(List.scala:381)
at
org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$jobFinished$1.apply$mcV$sp(SubMoleExecution.scala:149)
at
org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$jobFinished$1.apply(SubMoleExecution.scala:149)
at
org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$jobFinished$1.apply(SubMoleExecution.scala:149)
at
org.openmole.tool.lock.package$LockDecorator.apply(package.scala:28)
at
org.openmole.core.workflow.mole.SubMoleExecution.jobFinished(SubMoleExecution.scala:148)
at
org.openmole.core.workflow.mole.SubMoleExecution.finalState(SubMoleExecution.scala:266)
at org.openmole.core.workflow.mole.SubMoleExecution.org
<http://org.openmole.core.workflow.mole.SubMoleExecution.org>$openmole$core$workflow$mole$SubMoleExecution$$stateChanged$2(SubMoleExecution.scala:225)
at
org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$11.apply(SubMoleExecution.scala:228)
at
org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$11.apply(SubMoleExecution.scala:228)
at
org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1$$anonfun$apply$1$$anonfun$apply$2.apply(LocalExecutor.scala:80)
at
org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1$$anonfun$apply$1$$anonfun$apply$2.apply(LocalExecutor.scala:78)
at
org.openmole.core.workflow.job.MoleJob.signalChanged(MoleJob.scala:90)
at org.openmole.core.workflow.job.MoleJob.state_$eq(MoleJob.scala:94)
at org.openmole.core.workflow.job.MoleJob.perform(MoleJob.scala:101)
at
org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1$$anonfun$apply$1.apply(LocalExecutor.scala:83)
at
org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1$$anonfun$apply$1.apply(LocalExecutor.scala:64)
at scala.collection.immutable.List.foreach(List.scala:381)
at
org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1.apply(LocalExecutor.scala:64)
at
org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1.apply(LocalExecutor.scala:61)
at
org.openmole.core.workflow.execution.local.LocalExecutor.withRedirectedOutput(LocalExecutor.scala:126)
at
org.openmole.core.workflow.execution.local.LocalExecutor.run(LocalExecutor.scala:61)
at java.lang.Thread.run(Thread.java:722)
nov. 05, 2015 9:42:47 PM org.openmole.core.updater.UpdaterTask run
Avertissement: null
java.lang.OutOfMemoryError: unable to create new native thread
at java.lang.Thread.start0(Native Method)
at java.lang.Thread.start(Thread.java:691)
at
java.util.concurrent.ThreadPoolExecutor.addWorker(ThreadPoolExecutor.java:943)
at
java.util.concurrent.ThreadPoolExecutor.prestartCoreThread(ThreadPoolExecutor.java:1544)
at
java.util.concurrent.ScheduledThreadPoolExecutor.delayedExecute(ScheduledThreadPoolExecutor.java:333)
at
java.util.concurrent.ScheduledThreadPoolExecutor.schedule(ScheduledThreadPoolExecutor.java:530)
at org.openmole.core.updater.Updater$.delay(Updater.scala:49)
at org.openmole.core.updater.UpdaterTask.run(UpdaterTask.scala:29)
at
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
at java.lang.Thread.run(Thread.java:722)
An error has occurred. See the log file
/home/yildi/.openmole/.tmp/1446756128_21858/1446756130350.log.
--
Prof. Murat Yildizoglu
Note: Please use the following address as such
UNIVERSITE DE BORDEAUX
GREThA (UMR CNRS 5113)
MURAT YILDIZOGLU
16 AVENUE LEON DUGUIT
CS 50057
33608 PESSAC CEDEX
FRANCE
Bureau : E-331
mail: murat.yildizoglu at u-bordeaux.fr <http://u-bordeaux.fr>
web: www.yildizoglu.fr <http://www.yildizoglu.fr>
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