Hi Mathieu, I have just added these variables hoping that they could solve the problem. They were absent from the script the first time I have met this problem and sent you my first message.
-- Prof. Murat Yildizoglu [email protected] > Le 5 nov. 2015 à 22:04, Mathieu Leclaire <[email protected]> a écrit > : > > Hi Murat, > did you try to set a smaller value for OpenMOLEMemory (or without specifying > this variable) ? > Mathieu > Le 05/11/2015 21:47, Murat Yildizoglu a écrit : >> When I try to execute my mole on the cluster through a SSH connection, I get >> the following error again. >> I attach my script to this message. >> And the log message indicated at the end of the error message does not exist. >> >> (Type :q to quit) >> warning: there were two deprecation warnings; re-run with -deprecation for >> details >> warning: there were 58 feature warnings; re-run with -feature for details >> !SESSION 2015-11-05 21:42:09.360 >> ----------------------------------------------- >> eclipse.buildId=unknown >> java.version=1.7.0_03 >> java.vendor=Oracle Corporation >> BootLoader constants: OS=linux, ARCH=x86_64, WS=gtk, NL=fr_FR >> Framework arguments: -cp /home/yildi/openmole/openmole-plugins -gp >> /home/yildi/openmole/openmole-plugins-gui -s ./vdmy5avakas.oms -pw lokum >> Command-line arguments: -consoleLog -cp >> /home/yildi/openmole/openmole-plugins -gp >> /home/yildi/openmole/openmole-plugins-gui -s ./vdmy5avakas.oms -pw lokum >> >> !ENTRY org.eclipse.osgi 4 0 2015-11-05 21:42:47.778 >> !MESSAGE Application error >> !STACK 1 >> java.lang.OutOfMemoryError: unable to create new native thread >> at java.lang.Thread.start0(Native Method) >> at java.lang.Thread.start(Thread.java:691) >> at >> org.openmole.core.batch.refresh.JobManager$$anonfun$1.apply(JobManager.scala:68) >> at >> org.openmole.core.batch.refresh.JobManager$$anonfun$1.apply(JobManager.scala:61) >> at scala.collection.immutable.Range.foreach(Range.scala:166) >> at org.openmole.core.batch.refresh.JobManager.<init>(JobManager.scala:61) >> at >> org.openmole.core.batch.environment.BatchEnvironment$.jobManager$lzycompute(BatchEnvironment.scala:133) >> at >> org.openmole.core.batch.environment.BatchEnvironment$.jobManager(BatchEnvironment.scala:133) >> at >> org.openmole.core.batch.environment.BatchEnvironment$class.submit(BatchEnvironment.scala:192) >> at >> org.openmole.plugin.environment.pbs.PBSEnvironment.submit(PBSEnvironment.scala:69) >> at >> org.openmole.core.workflow.mole.MoleExecution.org$openmole$core$workflow$mole$MoleExecution$$submit(MoleExecution.scala:150) >> at >> org.openmole.core.workflow.mole.MoleExecution$$anonfun$group$2.apply(MoleExecution.scala:145) >> at >> org.openmole.core.workflow.mole.MoleExecution$$anonfun$group$2.apply(MoleExecution.scala:145) >> at scala.Option.map(Option.scala:146) >> at >> org.openmole.core.workflow.mole.MoleExecution.group(MoleExecution.scala:145) >> at >> org.openmole.core.workflow.mole.SubMoleExecution.submit(SubMoleExecution.scala:231) >> at >> org.openmole.core.workflow.transition.ITransition$class.submitNextJobsIfReady(ITransition.scala:115) >> at >> org.openmole.core.workflow.transition.ExplorationTransition.submitNextJobsIfReady(ExplorationTransition.scala:31) >> at >> org.openmole.core.workflow.transition.ExplorationTransition$$anonfun$submitIn$1.apply(ExplorationTransition.scala:65) >> at >> org.openmole.core.workflow.transition.ExplorationTransition$$anonfun$submitIn$1.apply(ExplorationTransition.scala:49) >> at scala.collection.immutable.List.foreach(List.scala:381) >> at >> org.openmole.core.workflow.transition.ExplorationTransition.submitIn(ExplorationTransition.scala:49) >> at >> org.openmole.core.workflow.transition.ExplorationTransition$$anonfun$perform$1.apply$mcV$sp(ExplorationTransition.scala:37) >> at >> org.openmole.core.workflow.transition.ExplorationTransition$$anonfun$perform$1.apply(ExplorationTransition.scala:37) >> at >> org.openmole.core.workflow.transition.ExplorationTransition$$anonfun$perform$1.apply(ExplorationTransition.scala:37) >> at org.openmole.tool.lock.package$LockDecorator.apply(package.scala:28) >> at >> org.openmole.core.workflow.transition.ExplorationTransition.perform(ExplorationTransition.scala:37) >> at >> org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$jobFinished$1$$anonfun$apply$mcV$sp$3.apply(SubMoleExecution.scala:149) >> at >> org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$jobFinished$1$$anonfun$apply$mcV$sp$3.apply(SubMoleExecution.scala:149) >> at scala.collection.immutable.List.foreach(List.scala:381) >> at >> org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$jobFinished$1.apply$mcV$sp(SubMoleExecution.scala:149) >> at >> org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$jobFinished$1.apply(SubMoleExecution.scala:149) >> at >> org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$jobFinished$1.apply(SubMoleExecution.scala:149) >> at org.openmole.tool.lock.package$LockDecorator.apply(package.scala:28) >> at >> org.openmole.core.workflow.mole.SubMoleExecution.jobFinished(SubMoleExecution.scala:148) >> at >> org.openmole.core.workflow.mole.SubMoleExecution.finalState(SubMoleExecution.scala:266) >> at >> org.openmole.core.workflow.mole.SubMoleExecution.org$openmole$core$workflow$mole$SubMoleExecution$$stateChanged$2(SubMoleExecution.scala:225) >> at >> org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$11.apply(SubMoleExecution.scala:228) >> at >> org.openmole.core.workflow.mole.SubMoleExecution$$anonfun$11.apply(SubMoleExecution.scala:228) >> at >> org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1$$anonfun$apply$1$$anonfun$apply$2.apply(LocalExecutor.scala:80) >> at >> org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1$$anonfun$apply$1$$anonfun$apply$2.apply(LocalExecutor.scala:78) >> at org.openmole.core.workflow.job.MoleJob.signalChanged(MoleJob.scala:90) >> at org.openmole.core.workflow.job.MoleJob.state_$eq(MoleJob.scala:94) >> at org.openmole.core.workflow.job.MoleJob.perform(MoleJob.scala:101) >> at >> org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1$$anonfun$apply$1.apply(LocalExecutor.scala:83) >> at >> org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1$$anonfun$apply$1.apply(LocalExecutor.scala:64) >> at scala.collection.immutable.List.foreach(List.scala:381) >> at >> org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1.apply(LocalExecutor.scala:64) >> at >> org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1.apply(LocalExecutor.scala:61) >> at >> org.openmole.core.workflow.execution.local.LocalExecutor.withRedirectedOutput(LocalExecutor.scala:126) >> at >> org.openmole.core.workflow.execution.local.LocalExecutor.run(LocalExecutor.scala:61) >> at java.lang.Thread.run(Thread.java:722) >> nov. 05, 2015 9:42:47 PM org.openmole.core.updater.UpdaterTask run >> Avertissement: null >> java.lang.OutOfMemoryError: unable to create new native thread >> at java.lang.Thread.start0(Native Method) >> at java.lang.Thread.start(Thread.java:691) >> at >> java.util.concurrent.ThreadPoolExecutor.addWorker(ThreadPoolExecutor.java:943) >> at >> java.util.concurrent.ThreadPoolExecutor.prestartCoreThread(ThreadPoolExecutor.java:1544) >> at >> java.util.concurrent.ScheduledThreadPoolExecutor.delayedExecute(ScheduledThreadPoolExecutor.java:333) >> at >> java.util.concurrent.ScheduledThreadPoolExecutor.schedule(ScheduledThreadPoolExecutor.java:530) >> at org.openmole.core.updater.Updater$.delay(Updater.scala:49) >> at org.openmole.core.updater.UpdaterTask.run(UpdaterTask.scala:29) >> at >> java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) >> at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334) >> at java.util.concurrent.FutureTask.run(FutureTask.java:166) >> at >> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110) >> at >> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603) >> at java.lang.Thread.run(Thread.java:722) >> >> An error has occurred. See the log file >> /home/yildi/.openmole/.tmp/1446756128_21858/1446756130350.log. >> >> >> >> -- >> Prof. Murat Yildizoglu >> >> Note: Please use the following address as such >> >> UNIVERSITE DE BORDEAUX >> GREThA (UMR CNRS 5113) >> MURAT YILDIZOGLU >> 16 AVENUE LEON DUGUIT >> CS 50057 >> 33608 PESSAC CEDEX >> FRANCE >> >> Bureau : E-331 >> >> mail: murat.yildizoglu at u-bordeaux.fr >> >> web: www.yildizoglu.fr >> >> >> _______________________________________________ >> OpenMOLE-users mailing list >> [email protected] >> http://fedex.iscpif.fr/mailman/listinfo/openmole-users > > > -- > Be green, keep it on the screen > Faites bonne impression et imprimez seulement au besoin! > _______________________________________________ > OpenMOLE-users mailing list > [email protected] > http://fedex.iscpif.fr/mailman/listinfo/openmole-users
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