Uh thanks, but i have a weird error now :
Picked up _JAVA_OPTIONS: -Xms1024m -Xmx2G -Xss256m
Nouvelle fenêtre ouverte dans la session du navigateur
nov. 25, 2016 9:23:45 PM
org.openmole.ui.Application$$anonfun$run$1$$anonfun$apply$mcI$sp$6 apply
INFOS: Server listening on port 41947.
!SESSION 2016-11-25 21:24:28.668
-----------------------------------------------
eclipse.buildId=unknown
java.version=1.8.0_101
java.vendor=Oracle Corporation
BootLoader constants: OS=linux, ARCH=x86_64, WS=gtk, NL=fr_FR
!ENTRY org.apache.commons.configuration2 4 0 2016-11-25 21:24:28.668
!MESSAGE FrameworkEvent ERROR
!STACK 0
java.io.IOException: Exception in opening zip file:
/home/reyman/.openmole/.tmp/1480105414_12098/org.eclipse.os
gi/90/0/bundleFile
at
org.eclipse.osgi.framework.util.SecureAction.getZipFile(SecureAction.java:305)
at
org.eclipse.osgi.storage.bundlefile.ZipBundleFile.basicOpen(ZipBundleFile.java:85)
at
org.eclipse.osgi.storage.bundlefile.ZipBundleFile.getZipFile(ZipBundleFile.java:98)
at
org.eclipse.osgi.storage.bundlefile.ZipBundleFile.checkedOpen(ZipBundleFile.java:65)
at
org.eclipse.osgi.storage.bundlefile.ZipBundleFile.getEntry(ZipBundleFile.java:232)
at
org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findClassImpl(ClasspathManager.java:562)
at
org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClassImpl(ClasspathManager.java
:540)
at
org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:527
)
at
org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:324)
at
org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:311)
at
org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:386)
at
org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:336)
at
org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:328)
at
org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:160)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at
org.apache.commons.configuration2.event.EventListenerList$EventListenerIterator.<init>(EventListener
List.java:308)
at
org.apache.commons.configuration2.event.EventListenerList.getEventListenerIterator(EventListenerList
.java:197)
at
org.apache.commons.configuration2.event.EventListenerList.fire(EventListenerList.java:158)
at
org.apache.commons.configuration2.builder.BasicConfigurationBuilder.fireBuilderEvent(BasicConfigurat
ionBuilder.java:636)
at
org.apache.commons.configuration2.builder.BasicConfigurationBuilder.getConfiguration(BasicConfigurat
ionBuilder.java:273)
at
org.openmole.core.workspace.ConfigurationFile$$anonfun$org$openmole$core$workspace$ConfigurationFile
$$config$1.apply(Configuration.scala:65)
at
org.openmole.core.workspace.ConfigurationFile$$anonfun$org$openmole$core$workspace$ConfigurationFile
$$config$1.apply(Configuration.scala:65)
at
org.openmole.tool.thread.package$.withThreadClassLoader(package.scala:66)
at org.openmole.core.workspace.ConfigurationF at
org.openmole.core.workspace.ConfigurationFile$$anonfun$value$1.apply(Configuration.scala:68)
at
org.openmole.core.workspace.ConfigurationFile$$anonfun$value$1.apply(Configuration.scala:68)
at
org.openmole.tool.lock.package$ReadWriteLockDecorator.read(package.scala:48)
at
org.openmole.core.workspace.ConfigurationFile.value(Configuration.scala:67)
at
org.openmole.core.workspace.Workspace.preferenceOption(Workspace.scala:142)
at
org.openmole.core.workspace.Workspace.preference(Workspace.scala:150)
at
org.openmole.core.workflow.execution.Environment$$anonfun$org$openmole$core$workflow$execution$Envir
onment$$_errors$1.apply$mcI$sp(Environment.scala:57)
at
org.openmole.tool.collection.SlidingList.put(SlidingList.scala:28)
at
org.openmole.core.workflow.execution.Environment$class.error(Environment.scala:58)
at
org.openmole.plugin.environment.egi.DIRACEnvironment.error(DIRACEnvironment.scala:83)
at
org.openmole.plugin.environment.batch.refresh.JobManager.$bang(JobManager.scala:133)
at
org.openmole.plugin.environment.batch.refresh.UploadActor.receive(UploadActor.scala:61)
at
org.openmole.plugin.environment.batch.refresh.JobManager$DispatcherActor$.receive(JobManager.scala:8
2)
at
org.openmole.plugin.environment.batch.refresh.JobManager$$anonfun$1$$anon$1.run(JobManager.scala:64)
Caused by: java.io.FileNotFoundException:
/home/reyman/.openmole/.tmp/1480105414_12098/org.eclipse.osgi/90/0/bu
ndleFile (Trop de fichiers ouverts)
at java.util.zip.ZipFile.open(Native Method)
at java.util.zip.ZipFile.<init>(ZipFile.java:219)
at java.util.zip.ZipFile.<init>(ZipFile.java:149)
at java.util.zip.ZipFile.<init>(ZipFile.java:163)
at
org.eclipse.osgi.framework.util.SecureAction.getZipFile(SecureAction.java:288)
... 37 more
ile.org$openmole$core$workspace$ConfigurationFile$$config(
Configuration.scala:65)
2016-11-25 13:31 GMT+01:00 Jonathan Passerat-Palmbach <
[email protected]>:
> (moleTask on env) will do :)
>
> Just an operator priority issue ;)
>
> J.
>
>
> On 25 November 2016 12:21:34 GMT+00:00, sebastien rey coyrehourcq <
> [email protected]> wrote:
>>
>> HI Jo,
>> i tried, without success :-/
>>
>> val moleTask = MoleTask(templateTask -- scriptTask)
>> exploration -< moleTask on env
>>
>> return
>>
>> org.openmole.core.console.ScalaREPL$CompilationError: (line 87) value on
>> is not a member of org.openmole.core.workflow.puzzle.Puzzle
>> exploration -< moleTask on env
>>
>> ---
>> Sébastien Rey Coyrehourcq
>> Research Engineer, BAP E, UMR IDEES
>> Sent from Nylas N1 <https://nylas.com/n1?ref=n1>, the extensible, open
>> source mail client.
>>
>> On nov. 25 2016, at 1:10 pm, Jonathan Passerat-Palmbach <
>> [email protected]> wrote:
>>
>>> Hey Seb,
>>>
>>> Try to wrap your two consecutive tasks in a MoleTask to apply the same
>>> env setting to both of them.
>>>
>>> http://www.openmole.org/current/Documentation_Language_Tasks_Mole.html
>>>
>>> Cheers
>>> J.
>>>
>>> On 25 November 2016 11:58:40 GMT+00:00, sebastien rey coyrehourcq <
>>> [email protected]> wrote:
>>>
>>> Hi guys,
>>>
>>> With env = LocalEnvironment(...)
>>>
>>> One little question about env position in final workflow,
>>> i need to run two task on grid node, so i position my env like that :
>>>
>>> val exploration =
>>> ExplorationTask( ...)
>>>
>>> val templateTask =
>>> TemplateFileTask(workDirectory / "parameters.xml", fileoutput) set (
>>> .... )
>>>
>>> val scriptTask =
>>> SystemExecTask("bash ./emergence2/script.sh ${fileoutput}") set ( ...)
>>>
>>> val copyFolder = CopyFileHook(folder, workDirectory /
>>> "results/${seeds(0)}_${tremble}_outputs")
>>>
>>>
>>> *exploration -< (templateTask -- scriptTask) on env hook copyFolder*
>>>
>>> I try other positions in the wf , but i have always a puzzle error :
>>>
>>> org.openmole.core.console.ScalaREPL$CompilationError: (line 85) value
>>> on is not a member of org.openmole.core.workflow.puzzle.Puzzle
>>> exploration -< templateTask on env -- scriptTask hook copyFolder
>>> // -- scriptTask2 hook ToStringHook()
>>> ^
>>>
>>> Any idea ?
>>>
>>> ---
>>> Sébastien Rey Coyrehourcq
>>> Research Engineer, BAP E, UMR IDEES
>>> Sent from Nylas N1 <https://nylas.com/n1?ref=n1>, the extensible, open
>>> source mail client.
>>>
>>> ------------------------------
>>>
>>> OpenMOLE-users mailing list
>>> [email protected]
>>> http://fedex.iscpif.fr/mailman/listinfo/openmole-users
>>>
>>>
>>> --
>>> Jonathan Passerat-Palmbach, PhD
>>> Research Associate
>>> Department of Computing
>>> Imperial College London
>>>
>>> South Kensington Campus
>>> Huxley Building - room 344
>>> 180 Queen's Gate
>>> London SW7 2AZ
>>
>> ------------------------------
>>
>> OpenMOLE-users mailing list
>> [email protected]
>> http://fedex.iscpif.fr/mailman/listinfo/openmole-users
>>
>>
> --
> Jonathan Passerat-Palmbach, PhD
> Research Associate
> Department of Computing
> Imperial College London
>
> South Kensington Campus
> Huxley Building - room 344
> 180 Queen's Gate
> London SW7 2AZ
>
> _______________________________________________
> OpenMOLE-users mailing list
> [email protected]
> http://fedex.iscpif.fr/mailman/listinfo/openmole-users
>
>
--
<http://stackoverflow.com/users/385881/reyman64>
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