It mean that you have an ulimit set tow low. Can you send the result of ulimit -a ?
Le 25/11/2016 à 21:37, reyman a écrit : > I precise, this error only happen with EGI environnement and not with > LocalEnvironnement. > And this error crash openmole in terminal. > > 2016-11-25 21:28 GMT+01:00 reyman <[email protected] > <mailto:[email protected]>>: > > Uh thanks, but i have a weird error now : > > Picked up _JAVA_OPTIONS: -Xms1024m -Xmx2G -Xss256m > Nouvelle fenêtre ouverte dans la session du navigateur > nov. 25, 2016 9:23:45 PM > org.openmole.ui.Application$$anonfun$run$1$$anonfun$apply$mcI$sp$6 > apply > INFOS: Server listening on port 41947. > !SESSION 2016-11-25 21:24:28.668 > ----------------------------------------------- > eclipse.buildId=unknown > java.version=1.8.0_101 > java.vendor=Oracle Corporation > BootLoader constants: OS=linux, ARCH=x86_64, WS=gtk, NL=fr_FR > > !ENTRY org.apache.commons.configuration2 4 0 2016-11-25 21:24:28.668 > !MESSAGE FrameworkEvent ERROR > !STACK 0 > java.io.IOException: Exception in opening zip file: > /home/reyman/.openmole/.tmp/1480105414_12098/org.eclipse.os > gi/90/0/bundleFile > at > > org.eclipse.osgi.framework.util.SecureAction.getZipFile(SecureAction.java:305) > at > > org.eclipse.osgi.storage.bundlefile.ZipBundleFile.basicOpen(ZipBundleFile.java:85) > at > > org.eclipse.osgi.storage.bundlefile.ZipBundleFile.getZipFile(ZipBundleFile.java:98) > at > > org.eclipse.osgi.storage.bundlefile.ZipBundleFile.checkedOpen(ZipBundleFile.java:65) > at > > org.eclipse.osgi.storage.bundlefile.ZipBundleFile.getEntry(ZipBundleFile.java:232) > at > > org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findClassImpl(ClasspathManager.java:562) > at > > org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClassImpl(ClasspathManager.java > :540) > at > > org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:527 > ) > at > > org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:324) > at > > org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:311) > at > > org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:386) > at > > org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:336) > at > > org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:328) > at > > org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:160) > at java.lang.ClassLoader.loadClass(ClassLoader.java:357) > at > > org.apache.commons.configuration2.event.EventListenerList$EventListenerIterator.<init>(EventListener > List.java:308) > at > > org.apache.commons.configuration2.event.EventListenerList.getEventListenerIterator(EventListenerList > .java:197) > at > > org.apache.commons.configuration2.event.EventListenerList.fire(EventListenerList.java:158) > at > > org.apache.commons.configuration2.builder.BasicConfigurationBuilder.fireBuilderEvent(BasicConfigurat > ionBuilder.java:636) > at > > org.apache.commons.configuration2.builder.BasicConfigurationBuilder.getConfiguration(BasicConfigurat > ionBuilder.java:273) > at > > org.openmole.core.workspace.ConfigurationFile$$anonfun$org$openmole$core$workspace$ConfigurationFile > $$config$1.apply(Configuration.scala:65) > at > > org.openmole.core.workspace.ConfigurationFile$$anonfun$org$openmole$core$workspace$ConfigurationFile > $$config$1.apply(Configuration.scala:65) > at > org.openmole.tool.thread.package$.withThreadClassLoader(package.scala:66) > at org.openmole.core.workspace.ConfigurationF at > > org.openmole.core.workspace.ConfigurationFile$$anonfun$value$1.apply(Configuration.scala:68) > at > > org.openmole.core.workspace.ConfigurationFile$$anonfun$value$1.apply(Configuration.scala:68) > at > > org.openmole.tool.lock.package$ReadWriteLockDecorator.read(package.scala:48) > at > > org.openmole.core.workspace.ConfigurationFile.value(Configuration.scala:67) > at > > org.openmole.core.workspace.Workspace.preferenceOption(Workspace.scala:142) > at > org.openmole.core.workspace.Workspace.preference(Workspace.scala:150) > at > > org.openmole.core.workflow.execution.Environment$$anonfun$org$openmole$core$workflow$execution$Envir > onment$$_errors$1.apply$mcI$sp(Environment.scala:57) > at > org.openmole.tool.collection.SlidingList.put(SlidingList.scala:28) > at > > org.openmole.core.workflow.execution.Environment$class.error(Environment.scala:58) > at > > org.openmole.plugin.environment.egi.DIRACEnvironment.error(DIRACEnvironment.scala:83) > at > > org.openmole.plugin.environment.batch.refresh.JobManager.$bang(JobManager.scala:133) > at > > org.openmole.plugin.environment.batch.refresh.UploadActor.receive(UploadActor.scala:61) > at > > org.openmole.plugin.environment.batch.refresh.JobManager$DispatcherActor$.receive(JobManager.scala:8 > 2) > at > > org.openmole.plugin.environment.batch.refresh.JobManager$$anonfun$1$$anon$1.run(JobManager.scala:64) > Caused by: java.io.FileNotFoundException: > /home/reyman/.openmole/.tmp/1480105414_12098/org.eclipse.osgi/90/0/bu > ndleFile (Trop de fichiers ouverts) > at java.util.zip.ZipFile.open(Native Method) > at java.util.zip.ZipFile.<init>(ZipFile.java:219) > at java.util.zip.ZipFile.<init>(ZipFile.java:149) > at java.util.zip.ZipFile.<init>(ZipFile.java:163) > at > > org.eclipse.osgi.framework.util.SecureAction.getZipFile(SecureAction.java:288) > ... 37 more > ile.org > <http://ile.org>$openmole$core$workspace$ConfigurationFile$$config( > Configuration.scala:65) > > > 2016-11-25 13:31 GMT+01:00 Jonathan Passerat-Palmbach > <[email protected] > <mailto:[email protected]>>: > > (moleTask on env) will do :) > > Just an operator priority issue ;) > > J. > > > On 25 November 2016 12:21:34 GMT+00:00, sebastien rey > coyrehourcq <[email protected] <mailto:[email protected]>> > wrote: > > HI Jo, > i tried, without success :-/ > > val moleTask = MoleTask(templateTask -- scriptTask) > exploration -< moleTask on env > > return > > org.openmole.core.console.ScalaREPL$CompilationError: > (line 87) value on is not a member of > org.openmole.core.workflow.puzzle.Puzzle > exploration -< moleTask on env > > --- > Sébastien Rey Coyrehourcq > Research Engineer, BAP E, UMR IDEES > Sent from Nylas N1 <https://nylas.com/n1?ref=n1>, the > extensible, open source mail client. > > On nov. 25 2016, at 1:10 pm, Jonathan Passerat-Palmbach > <[email protected] > <mailto:[email protected]>> wrote: > > Hey Seb, > > Try to wrap your two consecutive tasks in a MoleTask > to apply the same env setting to both of them. > > > http://www.openmole.org/current/Documentation_Language_Tasks_Mole.html > > <http://www.openmole.org/current/Documentation_Language_Tasks_Mole.html> > > Cheers > J. > > On 25 November 2016 11:58:40 GMT+00:00, sebastien rey > coyrehourcq <[email protected] > <mailto:[email protected]>> wrote: > > Hi guys, > > With env = LocalEnvironment(...) > > One little question about env position in final > workflow, > i need to run two task on grid node, so i position > my env like that : > > val exploration = > ExplorationTask( ...) > > val templateTask = > TemplateFileTask(workDirectory / > "parameters.xml", fileoutput) set ( .... ) > > val scriptTask = > SystemExecTask("bash ./emergence2/script.sh > ${fileoutput}") set ( ...) > > val copyFolder = CopyFileHook(folder, > workDirectory / > "results/${seeds(0)}_${tremble}_outputs") > > *exploration -< (templateTask -- scriptTask) on > env hook copyFolder > * > > I try other positions in the wf , but i have > always a puzzle error : > > org.openmole.core.console.ScalaREPL$CompilationError: > (line 85) value on is not a member of > org.openmole.core.workflow.puzzle.Puzzle > exploration -< templateTask on env -- > scriptTask hook copyFolder // -- scriptTask2 hook > ToStringHook() > ^ > > Any idea ? > > --- > Sébastien Rey Coyrehourcq > Research Engineer, BAP E, UMR IDEES > Sent from Nylas N1 <https://nylas.com/n1?ref=n1>, > the extensible, open source mail client. > > > ------------------------------------------------------------------------ > > OpenMOLE-users mailing list > [email protected] > <mailto:[email protected]> > http://fedex.iscpif.fr/mailman/listinfo/openmole-users > <http://fedex.iscpif.fr/mailman/listinfo/openmole-users> > > -- Jonathan Passerat-Palmbach, PhD Research Associate > Department of Computing Imperial College London South > Kensington Campus Huxley Building - room 344 180 > Queen's Gate London SW7 2AZ > > > ------------------------------------------------------------------------ > > OpenMOLE-users mailing list > [email protected] <mailto:[email protected]> > http://fedex.iscpif.fr/mailman/listinfo/openmole-users > <http://fedex.iscpif.fr/mailman/listinfo/openmole-users> > > -- Jonathan Passerat-Palmbach, PhD Research Associate > Department of Computing Imperial College London South > Kensington Campus Huxley Building - room 344 180 Queen's Gate > London SW7 2AZ > _______________________________________________OpenMOLE-users > mailing list [email protected] > <mailto:[email protected]> > http://fedex.iscpif.fr/mailman/listinfo/openmole-users > <http://fedex.iscpif.fr/mailman/listinfo/openmole-users> > > -- > <http://stackoverflow.com/users/385881/reyman64> > > -- > <http://stackoverflow.com/users/385881/reyman64> > > _______________________________________________ > OpenMOLE-users mailing list > [email protected] > http://fedex.iscpif.fr/mailman/listinfo/openmole-users
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