Our other option would be to build a statically link application, although I am still not sure how to generate the signature and link it into the app in a cross-compile (Platform Builder) environment.
fipslink.pl can handle even statically linked applications. My #1 comment from first letter was that it's possible to *optimize* it by running 'msincore file.exe', i.e. without any additional command line argument, and omitting second link stage. Well, admittedly it might be misplaced comment, because I'm not suggesting that it's your responsibility to fix fipslink.pl. But it's open discussion list, so don't take it as it was addressed to you personally.
PS. Someone else here has successfully built and used the Linux version on a similar hardware platform.
You can't compare Windows and Linux in the context, because Linux offers option to generate position-independent code, that we rely on. This means that there are no difficulties with base addresses, relocations, etc. on Linux.
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