Dear all,
Version: GNU parallel 20140222,
OS: CentOS 6.3;
I was trying to run the following command,
parallel -j5 {} < Test.in
and the Test.in Contains
/home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.0625 -v
10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.0625.out
/home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.125 -v 10
Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.125.out
/home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.25 -v 10
Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.25.out
/home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.5 -v 10
Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.5.out
/home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 1 -v 10
Combined_Full.scaled >& Combined_Full.scaled_0.03125_1.out
All of these commands are valid commands and works perfectly if executed
as serial jobs in a script.
The error I was getting is,
/bin/bash: /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g
0.0625 -v 10 Combined_Full.scaled >&
Combined_Full.scaled_0.03125_0.0625.out : No such file or directory
/bin/bash: /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g
0.125 -v 10 Combined_Full.scaled >&
Combined_Full.scaled_0.03125_0.125.out : No such file or directory
/bin/bash: /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g
0.25 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.25.out
: No such file or directory
/bin/bash: /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g
0.5 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.5.out :
No such file or directory
/bin/bash: /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g
1 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_1.out : No
such file or directory
All the files are present and
/home/varamesh/Softwares/libsvm-3.18/svm-train is a valid Executable
file. I had also tried giving path of the input file like
"/home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.0625
-v 10 /home/varamesh/Work/Model_Building/Combined_Full.scaled >&
./Combined_Full.scaled_0.03125_0.0625.out" as input, Even this gave me
the same Error. Please help me to solve the issue.
Thanks in advance.
--
Vakkalagadda A Ramesh
Jr. Research Fellow
Lab of Computational Biology
Centre for DNA Fingerprinting and Diagnostics (CDFD)
Nampally
Hyderabad-500001
Lab: 040-24749368
Mobile: 08686363632
