Classification: UNCLASSIFIED Caveats: NONE This is great. Thanks Cory. -simon
-----Original Message----- From: Cory Quammen [mailto:[email protected]] Sent: Wednesday, June 04, 2014 8:50 AM To: Su, Simon M CTR USARMY ARL (US) Cc: ParaView Subject: Re: [Paraview] ParaView superbuild matplotlib not finding numpy (UNCLASSIFIED) Thanks for testing, Simon. We'll get that patch in soon so you shouldn't run into this problem anymore. Cory On Wed, Jun 4, 2014 at 8:17 AM, Su, Simon M CTR USARMY ARL (US) <[email protected]> wrote: Classification: UNCLASSIFIED Caveats: NONE Cory, I have tested a new build on both the cray machines and your wildcard fix worked. Thanks for your help. -simon -----Original Message----- From: Cory Quammen [mailto:[email protected]] Sent: Tuesday, June 03, 2014 3:05 PM To: Su, Simon M CTR USARMY ARL (US) Cc: ParaView Subject: Re: [Paraview] ParaView superbuild matplotlib not finding numpy (UNCLASSIFIED) Simon, I have posted a potential fix to the gerrit review system: http://review.source.kitware.com/#/t/4259/ Can you try this out on this system to make sure it works? It basically replaces the 64 I asked you to add after lib in matplotlib.build.cmake with a * wildcard. Thanks, Cory On Tue, Jun 3, 2014 at 9:59 AM, Su, Simon M CTR USARMY ARL (US) <[email protected]> wrote: Classification: UNCLASSIFIED Caveats: NONE Cory, Yeap.... the build went pass the problem of matplotlib not finding numpy.... I will start turning of other features in the superbuild and try to build them Thanks for your help. -simon -----Original Message----- From: Cory Quammen [mailto:[email protected]] Sent: Tuesday, June 03, 2014 9:48 AM To: Su, Simon M CTR USARMY ARL (US) Cc: ParaView Subject: Re: [Paraview] ParaView superbuild matplotlib not finding numpy (UNCLASSIFIED) Simon, Hmm, that's odd that the find command didn't turn up anything. On what kind of system are you compiling? In any case, I think I see the problem. Can you modify the CMake source file ParaViewSuperbuild/Projects/matplotlib.build.cmake so that the line file(GLOB_RECURSE numpy-egg "${NUMPY_INSTALL_DIR}/lib/*.egg-info") is replaced with file(GLOB_RECURSE numpy-egg "${NUMPY_INSTALL_DIR}/lib64/*.egg-info") and build again? This will hopefully get you past the current build error. I'll investigate why python is being installed in install/lib64 instead of install/lib. Cory On Tue, Jun 3, 2014 at 9:33 AM, Su, Simon M CTR USARMY ARL (US) <[email protected]> wrote: Classification: UNCLASSIFIED Caveats: NONE Cory, The find didn't find anything... ssu:01% pwd /u/ssu/build/paraview/Build_4.1.0_osmesa/ParaViewSuperbuild_4.1.0-build/install ssu:01% find . -name *numpy* find: No match. But, the install directory has the following directories bin etc include lib lib64 share var and I believe numpy is in ssu:01% pwd /u/ssu/build/paraview/Build_4.1.0_osmesa/ParaViewSuperbuild_4.1.0-build/install/lib64/python2.6/site-packages ssu:01% ll total 8 drwx------ 18 ssu ssu 4096 May 30 11:41 numpy -rw------- 1 ssu ssu 1658 May 30 11:41 numpy-1.6.2-py2.6.egg-info lib64 only has a single python2.6 directory.... and all others are located in lib directory.... is this going to be a problem? Thanks -simon -----Original Message----- From: Cory Quammen [mailto:[email protected]] Sent: Tuesday, June 03, 2014 9:25 AM To: Su, Simon M CTR USARMY ARL (US) Cc: ParaView Subject: Re: [Paraview] ParaView superbuild matplotlib not finding numpy (UNCLASSIFIED) Simon, That looks like what I would expect. Next, could you navigate to /u/ssu/build/paraview/Build_4.1.0_osmesa/ParaViewSuperbuild_4.1.0-build/install and send me the results of running find . -name *numpy* Thanks, Cory On Tue, Jun 3, 2014 at 9:15 AM, Su, Simon M CTR USARMY ARL (US) <[email protected]> wrote: Classification: UNCLASSIFIED Caveats: NONE Hi Cory, When I do a make numpy, this is what I got the following. In the pv-matplotlib-build.cmake file attached, -DNUMPY_INSTALL_DIR is defined as -DNUMPY_INSTALL_DIR:PATH=/u/ssu/build/paraview/Build_4.1.0_osmesa/ParaViewSuperbuild_4.1.0-build/install; Thanks for your help -simon ================ make numpy ========================= -- Enabling zlib since needed by: boost;ffmpeg;freetype;hdf5;png;silo -- Enabling boost as requested. -- Enabling ffmpeg as requested. -- Enabling freetype as requested. -- Enabling libxml2 as requested. -- Enabling fontconfig as requested. -- Enabling szip as requested. -- Enabling hdf5 as requested. -- Enabling python as requested. -- Enabling numpy as requested. -- Enabling png as requested. -- Enabling matplotlib as requested. -- Enabling mpi as requested. -- Enabling osmesa as requested. -- Enabling qhull as requested. -- Enabling silo as requested. -- Enabling visitbridge as requested. -- Enabling paraview as requested. -- PROJECTS_ENABLED zlib;boost;ffmpeg;freetype;libxml2;fontconfig;szip;hdf5;python;numpy;png;matplotlib;mpi;osmesa;qhull;silo;visitbridge;paraview -- Configuring done -- Generating done -- Build files have been written to: /u/ssu/build/paraview/Build_4.1.0_osmesa/ParaViewSuperbuild_4.1.0-build [ 50%] Built target python [100%] Built target numpy ================================================================================= -----Original Message----- From: Cory Quammen [mailto:[email protected]] Sent: Tuesday, June 03, 2014 8:50 AM To: Su, Simon M CTR USARMY ARL (US) Cc: ParaView Subject: Re: [Paraview] ParaView superbuild matplotlib not finding numpy (UNCLASSIFIED) Hi Simon, You normally shouldn't have to point to the numpy directory, especially when you are opting to build numpy, as your options show. I wonder if your numpy built successfully. If you navigate to /u/ssu/build/paraview/Build_4.1.0_osmesa/ParaViewSuperbuild_4.1.0-build and run 'make numpy', does it succeed? Also, what can you send me the file /u/ssu/build/paraview/Build_4.1.0_osmesa/ParaViewSuperbuild_4.1.0-build/pv-matplotlib-build.cmake? There should be an option -DNUMPY_INSTALL_DIR:PATH in the command variable. Thanks, Cory On Mon, Jun 2, 2014 at 5:05 PM, Su, Simon M CTR USARMY ARL (US) <[email protected]> wrote: Classification: UNCLASSIFIED Caveats: NONE Hello, How do you specify to the superbuild process when building 'matplotlib', where numpy was built? I configured cmake using the following and the error message at the end of the email thanks -simon cmake \ -DCMAKE_INSTALL_PREFIX:PATH=${HOME}/pv-test/${version}_osmesa \ -DCMAKE_BUILD_TYPE=Release \ -DParaView_FROM_GIT=ON \ -DENABLE_boost=ON \ -DENABLE_cgns=OFF \ -DENABLE_ffmpeg=ON \ -DENABLE_fontconfig=ON \ -DENABLE_freetype=ON \ -DENABLE_hdf5=ON \ -DENABLE_libxml2=ON \ -DENABLE_matplotlib=ON \ -DENABLE_mesa=OFF \ -DENABLE_mpi=ON \ -DENABLE_numpy=ON \ -DENABLE_osmesa=ON \ -DENABLE_paraview=ON \ -DENABLE_png=ON \ -DENABLE_python=ON \ -DENABLE_qhull=ON \ -DENABLE_qt=OFF \ -DENABLE_silo=ON \ -DENABLE_szip=ON \ -DENABLE_visitbridge=ON \ -DUSE_SYSTEM_mpi=ON \ -DUSE_SYSTEM_python=ON \ -DUSE_SYSTEM_zlib=ON \ ../ParaViewSuperbuild_${version} ===================== error message ================================================ -- Enabling zlib since needed by: boost;ffmpeg;freetype;hdf5;png;silo -- Enabling boost as requested. -- Enabling ffmpeg as requested. -- Enabling freetype as requested. -- Enabling libxml2 as requested. -- Enabling fontconfig as requested. -- Enabling szip as requested. -- Enabling hdf5 as requested. -- Enabling python as requested. -- Enabling numpy as requested. -- Enabling png as requested. -- Enabling matplotlib as requested. -- Enabling mpi as requested. -- Enabling osmesa as requested. -- Enabling qhull as requested. -- Enabling silo as requested. -- Enabling visitbridge as requested. -- Enabling paraview as requested. -- PROJECTS_ENABLED zlib;boost;ffmpeg;freetype;libxml2;fontconfig;szip;hdf5;python;numpy;png;matplotlib;mpi;osmesa;qhull;silo;visitbridge;paraview -- Configuring done -- Generating done -- Build files have been written to: /u/ssu/build/paraview/Build_4.1.0_osmesa/ParaViewSuperbuild_4.1.0-build /u/ssu/build/paraview/Build_4.1.0_osmesa/ParaViewSuperbuild_4.1.0-build/install/lib64/python2.6/site-packages [ 20%] [ 22%] [ 29%] [ 38%] [ 38%] [ 37%] [ 40%] [ 40%] Built target zlib Built target szip Built target python Built target libxml2 Built target visitbridge Built target osmesa Built target mpi Performing update step for 'qhull' [ 49%] [ 55%] Built target freetype [ 70%] [ 70%] [ 73%] [ 73%] Built target hdf5 Built target numpy Built target png Built target boost Built target ffmpeg [ 78%] Built target fontconfig [ 81%] [ 84%] Built target silo Performing build step for 'matplotlib' LD_LIBRARY_PATH = /u/ssu/build/paraview/Build_4.1.0_osmesa/ParaViewSuperbuild_4.1.0-build/install/lib:/opt/cray/shared-root/1.0-1.0402.46893.3.17.gem/lib64:/opt/cray/nodehealth/5.1-1.0402.45895.3.76.gem/lib64:/opt/cray/csa/3.0.0-1_2.0402.45268.1.90.gem/lib64:/opt/cray/job/1.5.5-0.1_2.0402.45272.1.5.gem/lib64:/opt/gcc/mpc/0.8.1/lib:/opt/gcc/mpfr/2.4.2/lib:/opt/gcc/gmp/4.3.2/lib:/opt/gcc/4.8.2/snos/lib64:/opt/cray/shared-root/1.0-1.0402.46893.3.17.gem/lib64:/opt/cray/nodehealth/5.1-1.0402.45895.3.76.gem/lib64:/opt/cray/csa/3.0.0-1_2.0402.45268.1.90.gem/lib64:/opt/cray/job/1.5.5-0.1_2.0402.45272.1.5.gem/lib64:/opt/gcc/mpc/0.8.1/lib:/opt/gcc/mpfr/2.4.2/lib:/opt/gcc/gmp/4.3.2/lib:/opt/gcc/4.8.2/snos/lib64 Already on 'master' Your branch is up-to-date with 'origin/master'. CMake Error at /u/ssu/build/paraview/Build_4.1.0_osmesa/ParaViewSuperbuild_4.1.0/Projects/matplotlib.build.cmake:12 (message): Failed to locate numpy-egg CMake Error at /u/ssu/build/paraview/Build_4.1.0_osmesa/ParaViewSuperbuild_4.1.0-build/pv-matplotlib-build.cmake:26 (message): Failed!!! make[2]: *** [matplotlib/src/matplotlib-stamp/matplotlib-build] Error 1 make[1]: *** [CMakeFiles/matplotlib.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... [ 85%] Performing configure step for 'qhull' Classification: UNCLASSIFIED Caveats: NONE _______________________________________________ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview Classification: UNCLASSIFIED Caveats: NONE Classification: UNCLASSIFIED Caveats: NONE Classification: UNCLASSIFIED Caveats: NONE Classification: UNCLASSIFIED Caveats: NONE Classification: UNCLASSIFIED Caveats: NONE
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