Can replicate the problem, thanks. I don't see any suspicious changes in the ThirdParty/xdmf2 or vtkIOXdmf2 directories that might cause this.
Trying with the newer Xdmf3 path now. Mind filing a bug report? David E DeMarle Kitware, Inc. R&D Engineer 21 Corporate Drive Clifton Park, NY 12065-8662 Phone: 518-881-4909 On Tue, Jul 12, 2016 at 9:07 AM, Sonja Habbinga <[email protected]> wrote: > Hello, > > since Version 5, I have several problems using the xdmf reader. > Unlike ParaView4.4.0, which is able to read it withou any problems, > ParaView 5.1.0 and 5.0.1 fail to read the following xdmf file: > (Please find the complete xdmf file here: > https://fz-juelich.sciebo.de/index.php/s/f6VicXjvJz64q3l > and the binary file here: > https://fz-juelich.sciebo.de/index.php/s/XKcfR9kDKW9Nmct ) > > Can anyone reproduce the error? Has the xdmf reader changed sice 4.4.0? > > thanks for your help, > Sonja > > > ############################################################################################# > <?xml version="1.0" ?> > <!DOCTYPE Xdmf SYSTEM "Xdmf.dtd" []> > <Xdmf xmlns:xi="http://www.w3.org/2001/XInclude"; Version="2.0"> > <Domain> > <Grid Name="timeslice 784" GridType="Uniform"> > <Topology name="T00000" TopologyType="3DCoRectMesh" > Dimensions=" 1000 400 1"> > </Topology> > <Geometry name="G00000" Type="ORIGIN_DXDYDZ"> > <!-- Origin [um] --> > <DataItem Format="XML" Dimensions="3"> > 0.00000000E+00 0.00000000E+00 0.19949875E+02 > </DataItem> > <!-- DzDyDx [um] --> > <DataItem Format="XML" Dimensions="3"> > 0.50050050E-01 0.10025063E+00 0.10025063E+00 > </DataItem> > </Geometry> > <!-- Time of timeslice [fs] --> > <Time TimeType="Single" Value=" 0.93397947E+02"/> > > <!-- Particle densities per particle species [units] --> > <Attribute Name="Charge density - electrons" Center="Node"> > <DataItem Format="Binary" Seek=" 0" DataType="Float" > Precision="4" Endian="Little" > Dimensions=" 1000 400 1"> > pfield00784 > </DataItem> > </Attribute> > <Attribute Name="Charge density - protons" Center="Node"> > <DataItem Format="Binary" Seek=" 1600000" DataType="Float" > Precision="4" Endian="Little" > Dimensions=" 1000 400 1"> > pfield00784 > </DataItem> > </Attribute> > > ... > > ############################################################################################# > the error message looks like this: > > Alloc :: Resource temporarily unavailable > ERROR: In > > /dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/IO/Xdmf2/vtkXdmfHeavyData.cxx, > line 1208 > vtkXdmfReader (0x3c794c0): Failed to read attribute data > > > Alloc :: Resource temporarily unavailable > ERROR: In > > /dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/IO/Xdmf2/vtkXdmfHeavyData.cxx, > line 1208 > vtkXdmfReader (0x3c794c0): Failed to read attribute data > > > Alloc :: Resource temporarily unavailable > ERROR: In > > /dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/IO/Xdmf2/vtkXdmfHeavyData.cxx, > line 1208 > vtkXdmfReader (0x3c794c0): Failed to read attribute data > > .... > > Alloc :: No such file or directory > XDMF Error in > > /dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx > line 551 (Memory Object Array has no data storage) > XDMF Error in > > /dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx > line 905 (Can't Read Temp Dataset) > Alloc :: No such file or directory > XDMF Error in > > /dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx > line 551 (Memory Object Array has no data storage) > XDMF Error in > > /dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx > line 905 (Can't Read Temp Dataset) > Alloc :: No such file or directory > XDMF Error in > > /dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx > line 551 (Memory Object Array has no data storage) > XDMF Error in > > /dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx > line 905 (Can't Read Temp Dataset) > Alloc :: Success > XDMF Error in > > /dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx > line 551 (Memory Object Array has no data storage) > XDMF Error in > > /dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx > line 905 (Can't Read Temp Dataset) > Alloc :: Success > > ... > > Generic Warning: In > > /dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Rendering/Volume/vtkVolumeTextureMapper3D.cxx, > line 682 > vtkVolumeTextureMapper3D::vtkVolumeTextureMapper3D was deprecated for > VTK 7.0 and will be removed in a future version. > > > Generic Warning: In > > /dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Rendering/VolumeOpenGL/vtkOpenGLVolumeTextureMapper3D.cxx, > line 57 > vtkOpenGLVolumeTextureMapper3D::vtkOpenGLVolumeTextureMapper3D was > deprecated for VTK 7.0 and will be removed in a future version. > > > ERROR: In > > /dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Common/Core/vtkAOSDataArrayTemplate.txx, > line 153 > vtkFloatArray (0x5490c60): Source array too small, requested tuple at > index 0, but there are only 0 tuples in the array. > > > ERROR: In > > /dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Common/Core/vtkAOSDataArrayTemplate.txx, > line 153 > vtkFloatArray (0x5490e60): Source array too small, requested tuple at > index 0, but there are only 0 tuples in the array. > > > ERROR: In > > /dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Common/Core/vtkAOSDataArrayTemplate.txx, > line 153 > vtkFloatArray (0x5491200): Source array too small, requested tuple at > index 0, but there are only 0 tuples in the array. > > > ERROR: In > > /dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Common/Core/vtkAOSDataArrayTemplate.txx, > line 153 > vtkFloatArray (0x54915a0): Source array too small, requested tuple at > index 0, but there are only 0 tuples in the array. > > > ... > > > > > > > > > ------------------------------------------------------------------------------------------------ > > ------------------------------------------------------------------------------------------------ > Forschungszentrum Juelich GmbH > 52425 Juelich > Sitz der Gesellschaft: Juelich > Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. 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