In particular, BioPerl: www.bioperl.org
- Jonathan At 04:21 PM 5/14/2002 +0100, [EMAIL PROTECTED] wrote: >Heiko Nieke writes: > > > > Hi, > > > > as I am relatively new to Perl it would be great if anybody of you could > > help me to solve the following problem: > > > > Description of the problem: > > > > - I would like to read a sequence in Fasta Format (stored as text file > > on a local hard disk) > > > > e.g > > > Test1 > > AGTGGTGCAGTGCGTCGTTTTTGCAGTCCC..... > > > > - Then I would like to search for a certain pattern within the sequence > > (e.g. AGTG). > > > > --> I know how to do that but now comes my question > > > > What modules do I need to graphically display all found patterns within > > the queried sequence? > > > > Example for the output on the screen: > > >Test1 > > AGTGGTGCAGTGCGTCGTTTTTGCAGTCCC.... > > > > Is there same code (examples) available? > >There are quite a few modules on CPAN that help with bioinformatics, >see: > > http://search.cpan.org/search?mode=module&query=bio > >There is also a recent book, see: > > >http://www.amazon.com/exec/obidos/ASIN/0970029721/qid=1021389216/sr=8-3/ref=sr_8_3/002-4920686-6749615 > >HTH > >-- >Brian Raven > >Yes, we have consensus that we need 64 bit support. :-) > -- Larry Wall in <[EMAIL PROTECTED]> > > >----------------------------------------------------------------------- >The information contained in this e-mail is confidential and solely >for the intended addressee(s). Unauthorised reproduction, disclosure, >modification, and/or distribution of this email may be unlawful. If you >have received this email in error, please notify the sender immediately >and delete it from your system. The views expressed in this message >do not necessarily reflect those of >LIFFE Holdings Plc or any of its subsidiary companies. >----------------------------------------------------------------------- > >_______________________________________________ >Perl-Win32-Users mailing list >[EMAIL PROTECTED] >To unsubscribe: http://listserv.ActiveState.com/mailman/mysubs Jonathan Epstein [EMAIL PROTECTED] Head, Unit on Biologic Computation (301)402-4563 Office of the Scientific Director Bldg 31, Room 2A47 Nat. Inst. of Child Health & Human Development 31 Center Drive National Institutes of Health Bethesda, MD 20892 _______________________________________________ Perl-Win32-Users mailing list [EMAIL PROTECTED] To unsubscribe: http://listserv.ActiveState.com/mailman/mysubs
