On Mon, Dec 21, 2009 at 2:33 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> hmm - the tarball is a year old.. > > [petsc:pub/petsc/externalpackages] petsc> ls -lt sowing-1.1.11-a.tar.gz > -rw-r--r-- 1 petsc pdetools 630610 2008-12-15 22:21 sowing-1.1.11-a.tar.gz > [petsc:pub/petsc/externalpackages] petsc> > Something is screwed. It stopped working this morning when I tried to rebuild, then reconfigure, then scorched earth reconfigure. Who touched this last? Also, here is the specific fail: knepley at khan:/PETSc3/petsc/petsc-dev/src/mat/impls/aij/mpi/mumps$ valgrind /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort -dir /PETSc3/petsc/petsc-dev/src/mat/impls/aij/mpi/mumps/ftn-auto -mnative -ansi -nomsgs -noprofile -anyname -mapptr -mpi -mpi2 -ferr -ptrprefix Petsc -ptr64 PETSC_USE_POINTER_CONVERSION -fcaps PETSC_HAVE_FORTRAN_CAPS -fuscore PETSC_HAVE_FORTRAN_UNDERSCORE mumps.c It says there is a stack smash and no other info. This is completely fucking my development right now. Matt > Satish > > On Mon, 21 Dec 2009, Matthew Knepley wrote: > > > I killed my directory, removed sowing from extpacks, and reran configure, > > but I get > > > > TESTING: checkSharedLibrary from > > PETSc.packages.sowing(config/BuildSystem/config/package.py:423) > > *** stack smashing detected ***: > > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort terminated > > ======= Backtrace: ========= > > /lib/tls/i686/cmov/libc.so.6(__fortify_fail+0x48)[0xb7daf138] > > /lib/tls/i686/cmov/libc.so.6(__fortify_fail+0x0)[0xb7daf0f0] > > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort[0x8052504] > > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort[0x804a686] > > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort[0x804a0b3] > > /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe0)[0xb7cd8450] > > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort[0x80490b1] > > ======= Memory map: ======== > > 08048000-08054000 r-xp 00000000 08:06 5030686 > > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort > > 08054000-08055000 rw-p 0000c000 08:06 5030686 > > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort > > 08055000-08077000 rw-p 08055000 00:00 0 [heap] > > b7cc1000-b7cc2000 rw-p b7cc1000 00:00 0 > > b7cc2000-b7e0b000 r-xp 00000000 08:06 2352482 /lib/tls/i686/cmov/ > > libc-2.7.so > > b7e0b000-b7e0c000 r--p 00149000 08:06 2352482 /lib/tls/i686/cmov/ > > libc-2.7.so > > b7e0c000-b7e0e000 rw-p 0014a000 08:06 2352482 /lib/tls/i686/cmov/ > > libc-2.7.so > > b7e0e000-b7e11000 rw-p b7e0e000 00:00 0 > > b7e11000-b7e18000 r-xp 00000000 08:06 2352512 /lib/tls/i686/cmov/ > > librt-2.7.so > > b7e18000-b7e1a000 rw-p 00006000 08:06 2352512 /lib/tls/i686/cmov/ > > librt-2.7.so > > b7e1a000-b7e1b000 rw-p b7e1a000 00:00 0 > > b7e1b000-b7e2f000 r-xp 00000000 08:06 2352508 /lib/tls/i686/cmov/ > > libpthread-2.7.so > > b7e2f000-b7e31000 rw-p 00013000 08:06 2352508 /lib/tls/i686/cmov/ > > libpthread-2.7.so > > b7e31000-b7e33000 rw-p b7e31000 00:00 0 > > b7e38000-b7e42000 r-xp 00000000 08:06 2334868 /lib/libgcc_s.so.1 > > b7e42000-b7e43000 rw-p 0000a000 08:06 2334868 /lib/libgcc_s.so.1 > > b7e43000-b7e46000 rw-p b7e43000 00:00 0 > > b7e46000-b7f04000 r-xp 00000000 08:06 5030650 > > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/lib/libmpich.so.1.1 > > b7f04000-b7f07000 rw-p 000bd000 08:06 5030650 > > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/lib/libmpich.so.1.1 > > b7f07000-b7f29000 rw-p b7f07000 00:00 0 > > b7f29000-b7f2a000 r-xp b7f29000 00:00 0 [vdso] > > b7f2a000-b7f44000 r-xp 00000000 08:06 2335045 /lib/ld-2.7.so > > b7f44000-b7f46000 rw-p 00019000 08:06 2335045 /lib/ld-2.7.so > > bfb51000-bfb66000 rw-p bffeb000 00:00 0 [stack] > > > ********************************************************************************* > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for > > details): > > > --------------------------------------------------------------------------------------- > > *******Error generating Fortran stubs: Error running bfort Aborted******* > > > ********************************************************************************* > > > > Matt > > > > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20091221/6178c6c0/attachment.html>
