Mark, Sorry, no help here, except that cmake is pretty easy to install from source, so that might be my recommendation if you don't want to wait for help from their systems team.
A On Thu, Dec 1, 2011 at 1:30 AM, Mark F. Adams <mark.adams at columbia.edu>wrote: > Thanks Tim, I do use gcc. And this is on Franklin at NERSC. > > Cmake is just kicking my ass, now I get (appended). > > I do have an old version of cmake here: > > madams/petsc-dev> which cmake > /usr/common/usg/cmake/2.8.3/bin/cmake > > any ideas? > Mark > > =============================================================================== > Configuring METIS; this may take > several minutes > > =============================================================================== > > > ******************************************************************************* > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for > details): > > ------------------------------------------------------------------------------- > Error running configure on METIS: Could not execute "cd > /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 && make > distclean && make config > prefix=/global/homes/m/madams/petsc-dev/arch-xt5-opt cc="cc" > doubleprecision=1": > rm -rf build/Linux-x86_64 > rm -rf build/Linux-x86_64 > mkdir -p build/Linux-x86_64 > cd build/Linux-x86_64 && cmake > /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 > -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH= > -DCMAKE_INSTALL_PREFIX=/global/homes/m/madams/petsc-dev/arch-xt5-opt > -DCMAKE_C_COMPILER=cc -DMETIS_USE_DOUBLEPRECISION=1 > -- The C compiler identification is GNU > -- The CXX compiler identification is GNU > -- Check for working C compiler: /opt/cray/xt-asyncpe/5.01/bin/cc > -- Check for working C compiler: /opt/cray/xt-asyncpe/5.01/bin/cc -- works > -- Detecting C compiler ABI info > -- Detecting C compiler ABI info - done > -- Check for working CXX compiler: /opt/gcc/4.5.3/bin/c++ > -- Check for working CXX compiler: /opt/gcc/4.5.3/bin/c++ -- works > -- Detecting CXX compiler ABI info > -- Detecting CXX compiler ABI info - done > -- Configuring incomplete, errors occurred! > CMake Error at CMakeLists.txt:21 (include): > include could not find load file: > > /GKlibSystem.cmake > > > make: *** [config] Error 1 > > > > On Nov 30, 2011, at 4:00 PM, Tim Gallagher wrote: > > Without knowing how your system is configured, this may not help. But on > the Cray systems we use (they have the modules package installed), if we > are using a compiler other than GNU (Intel, PGI, etc) but we want to use > cmake, we still have to load the gcc module (not the programming > environment, just the module). > > On our machines, it means we may load the PrgEnv-Intel module (so cc > points to icc, ftn points to ifort, etc) but we also have to load > gcc/<version> to get cmake to work. > > Tim > > ------------------------------ > *From: *"Aron Ahmadia" <aron.ahmadia at kaust.edu.sa> > *To: *"For users of the development version of PETSc" < > petsc-dev at mcs.anl.gov> > *Sent: *Wednesday, November 30, 2011 3:49:25 PM > *Subject: *Re: [petsc-dev] metis config error on XT4 > > looks like a broken cmake... > > What happens when you just run: cmake by itself? > > A > > On Wed, Nov 30, 2011 at 11:47 PM, Mark F. Adams <mark.adams at columbia.edu> > wrote: > >> I'm getting this error on Franklin at NERSC: >> >> >> ******************************************************************************* >> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for >> details): >> >> ------------------------------------------------------------------------------- >> Error running configure on METIS: Could not execute "cd >> /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 && make >> distclean && make config >> prefix=/global/homes/m/madams/petsc-dev/arch-xt5-opt cc="cc" >> doubleprecision=1": >> rm -rf build/Linux-x86_64 >> rm -rf build/Linux-x86_64 >> mkdir -p build/Linux-x86_64 >> cd build/Linux-x86_64 && cmake >> /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 >> -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH= >> -DCMAKE_INSTALL_PREFIX=/global/homes/m/madams/petsc-dev/arch-xt5-opt >> -DCMAKE_C_COMPILER=cc -DMETIS_USE_DOUBLEPRECISION=1 >> cmake: /opt/gcc/4.5.3/snos/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' >> not found (required by cmake) >> make: *** [config] Error 1 >> >> ******************************************************************************* >> >> any ideas? >> >> Mark >> > > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20111201/380e9790/attachment.html>
