The nightlybuilds on OSX are primarily with gcc. We don't have a build with clang.
I have Xcode 4.6 on OSX 10.8. I just attempted a build with clang and see errors. Perhaps Barry/Srhi who use OSX know more about Xcode5/clang issues. Attaching my make.log Using configure Options: CC=clang CXX=clang++ FC=gfortran --download-mpich=1 [balay@petsc-mini petsc.test (next)]$ sw_vers ProductName: Mac OS X ProductVersion: 10.8.4 BuildVersion: 12E55 [balay@petsc-mini petsc.test (next)]$ xcodebuild -version Xcode 4.6.2 Build version 4H1003 [balay@petsc-mini petsc.test (next)]$ clang -v Apple LLVM version 4.2 (clang-425.0.28) (based on LLVM 3.2svn) Target: x86_64-apple-darwin12.4.0 Thread model: posix [balay@petsc-mini petsc.test (next)]$ Satish On Wed, 9 Oct 2013, Lisandro Dalcin wrote: > Satish, I have problems to build PETSc with Apple's clang on OS X > 10.8.5. Configure goes fine, then while building the compiler crashes > bad at parsing the MPI_Xxx macros that log MPI calls (at petsclog.h). > clang on Linux works just fine, but this Apple version crashes. > > Can you tell me what OS X and clang versions are you testing PETSc on? > > Here is my info (OS X 10.8.5, had same issues with previous 10.8.x): > > $ uname -a > Darwin macarena 12.5.0 Darwin Kernel Version 12.5.0: Mon Jul 29 > 16:33:49 PDT 2013; root:xnu-2050.48.11~1/RELEASE_X86_64 x86_64 > > $ cc --version > Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) > Target: x86_64-apple-darwin12.5.0 > Thread model: posix > > $ c++ --version > Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) > Target: x86_64-apple-darwin12.5.0 > Thread model: posix > >
make[1]: Entering directory `/Users/balay/petsc.test' make[1]: Leaving directory `/Users/balay/petsc.test' make[1]: Entering directory `/Users/balay/petsc.test' ========================================== See documentation/faq.html and documentation/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems To subscribe to the PETSc announcement list, send mail to [email protected] with the message: subscribe petsc-announce To subscribe to the PETSc users mailing list, send mail to [email protected] with the message: subscribe petsc-users ========================================== On Wed Oct 9 11:21:19 CDT 2013 on petsc-mini.mcs.anl.gov Machine characteristics: Darwin petsc-mini.mcs.anl.gov 12.4.0 Darwin Kernel Version 12.4.0: Wed May 1 17:57:12 PDT 2013; root:xnu-2050.24.15~1/RELEASE_X86_64 x86_64 ----------------------------------------- Using PETSc directory: /Users/balay/petsc.test Using PETSc arch: arch-darwin-c-debug ----------------------------------------- PETSC_VERSION_RELEASE 0 PETSC_VERSION_MAJOR 3 PETSC_VERSION_MINOR 4 PETSC_VERSION_SUBMINOR 2 PETSC_VERSION_PATCH 0 PETSC_VERSION_DATE "unknown" PETSC_VERSION_GIT "unknown" PETSC_VERSION_DATE_GIT "unknown" PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ----------------------------------------- Using configure Options: CC=clang CXX=clang++ FC=gfortran --download-mpich=1 Using configuration flags: #define INCLUDED_PETSCCONF_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_RTLD_DEFAULT 1 #define PETSC_UINTPTR_T uintptr_t #define PETSC_HAVE_PTHREAD 1 #define PETSC_DEPRECATED(why) __attribute((deprecated)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_MPI 1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_LIB_DIR "/Users/balay/petsc.test/arch-darwin-c-debug/lib" #define PETSC_HAVE_FORTRAN 1 #define PETSC_HAVE_SOWING 1 #define PETSC_SLSUFFIX "dylib" #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_UNUSED __attribute((unused)) #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_HAVE_C2HTML 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_DIR_SEPARATOR '/' #define PETSC_PATH_SEPARATOR ':' #define PETSC__BSD_SOURCE 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_HAVE_BLASLAPACK 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_CXXABI_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_MEMORY_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_USING_F90 1 #define PETSC_USING_F2003 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT restrict #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBBLAS 1 #define PETSC_HAVE_LIBZ 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_LIBGFORTRAN 1 #define PETSC_HAVE_LIBGCC_EXT_10_5 1 #define PETSC_HAVE_LIBPTHREAD 1 #define PETSC_HAVE_LIBLAPACK 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LIBMPICHF90 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_LIBM 1 #define PETSC_HAVE_LIBQUADMATH 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_ARCH "arch-darwin-c-debug" #define PETSC_VERSION_DATE_GIT "2013-10-09 17:36:12 +0200" #define PETSC_VERSION_GIT "11bf492b43c77d532f1d3fff669e66f73549a212" #define PETSC_DIR "/Users/balay/petsc.test" #define HAVE_GZIP 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_MISSING_DREAL 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_USE_FORTRANKIND 1 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_SYSCTLBYNAME 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE__GFORTRAN_IARGC 1 #define PETSC_SIGNAL_CAST #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC_USE_GDB_DEBUGGER 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_GFORTRAN_IARGC 1 #define PETSC_USE_BYTES_FOR_SIZE 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_MEMALIGN 16 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 ----------------------------------------- Using C/C++ compile: /Users/balay/petsc.test/arch-darwin-c-debug/bin/mpicc -c -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/balay/petsc.test/include -I/Users/balay/petsc.test/arch-darwin-c-debug/include mpicc -show: clang -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -Wl,-flat_namespace -I/Users/balay/petsc.test/arch-darwin-c-debug/include -L/Users/balay/petsc.test/arch-darwin-c-debug/lib -lpmpich -lmpich -lopa -lmpl -lpthread Using Fortran compile: /Users/balay/petsc.test/arch-darwin-c-debug/bin/mpif90 -c -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -I/Users/balay/petsc.test/include -I/Users/balay/petsc.test/arch-darwin-c-debug/include mpif90 -show: gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -Wl,-flat_namespace -I/Users/balay/petsc.test/arch-darwin-c-debug/include -I/Users/balay/petsc.test/arch-darwin-c-debug/include -L/Users/balay/petsc.test/arch-darwin-c-debug/lib -lmpichf90 -lpmpich -lmpich -lopa -lmpl -lpthread ----------------------------------------- Using C/C++ linker: /Users/balay/petsc.test/arch-darwin-c-debug/bin/mpicc Using C/C++ flags: -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 Using Fortran linker: /Users/balay/petsc.test/arch-darwin-c-debug/bin/mpif90 Using Fortran flags: -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g ----------------------------------------- Using libraries: -L/Users/balay/petsc.test/arch-darwin-c-debug/lib -L/Users/balay/petsc.test/arch-darwin-c-debug/lib -lpetsc -llapack -lblas -lpthread -L/usr/lib/clang/4.2/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -lclang_rt.osx -lmpichcxx -lstdc++ -L/usr/bin/../lib/clang/4.2/lib/darwin -lclang_rt.osx -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -lclang_rt.osx -ldl ------------------------------------------ Using mpiexec: /Users/balay/petsc.test/arch-darwin-c-debug/bin/mpiexec ========================================== Building PETSc using GNU Make with 2 build threads ========================================== make[2]: Entering directory `/Users/balay/petsc.test' /usr/bin/python conf/gmakegen.py --petsc-arch=arch-darwin-c-debug make[2]: Leaving directory `/Users/balay/petsc.test' make[2]: Entering directory `/Users/balay/petsc.test' Use "/usr/bin/make V=1" to see the verbose compile lines. CC arch-darwin-c-debug/obj/src/sys/utils/arch.o CC arch-darwin-c-debug/obj/src/sys/utils/fhost.o CC arch-darwin-c-debug/obj/src/sys/utils/fuser.o CC arch-darwin-c-debug/obj/src/sys/utils/memc.o CC arch-darwin-c-debug/obj/src/sys/utils/mpiu.o CC arch-darwin-c-debug/obj/src/sys/utils/psleep.o 0 clang 0x0000000100c57bb2 main + 12932498 Stack dump: 0. Program arguments: /usr/bin/clang -cc1 -triple x86_64-apple-macosx10.8.0 -emit-obj -mrelax-all -disable-free -disable-llvm-verifier -main-file-name mpiu.c -pic-level 2 -mdisable-fp-elim -masm-verbose -munwind-tables -target-cpu core2 -target-linker-version 136 -g -coverage-file /Users/balay/petsc.test/arch-darwin-c-debug/obj/src/sys/utils/mpiu.o -resource-dir /usr/bin/../lib/clang/4.2 -dependency-file arch-darwin-c-debug/obj/src/sys/utils/mpiu.d -MT arch-darwin-c-debug/obj/src/sys/utils/mpiu.o -MP -I /Users/balay/petsc.test/include -I /Users/balay/petsc.test/arch-darwin-c-debug/include -I /Users/balay/petsc.test/arch-darwin-c-debug/include -fmodule-cache-path /var/folders/4m/zbggpg253zq_yr5lzn_53s_w0000gn/T/clang-module-cache -O0 -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fconst-strings -fdebug-compilation-dir /Users/balay/petsc.test -ferror-limit 19 -fmessage-length 0 -stack-protector 1 -mstackrealign -fblocks -fno-inline -fobjc-runtime=macosx-10.8.0 -fobjc-dispatch-method=mixed -fobjc-default-synthesize-properties -fdiagnostics-show-option -o arch-darwin-c-debug/obj/src/sys/utils/mpiu.o -x c src/sys/utils/mpiu.c 1. src/sys/utils/mpiu.c:21:12 <Spelling=/Users/balay/petsc.test/include/petsclog.h:348:128>: current parser token ')' 2. src/sys/utils/mpiu.c:11:1: parsing function body 'PetscSequentialPhaseBegin_Private' 3. src/sys/utils/mpiu.c:11:1: in compound statement ('{}') 4. src/sys/utils/mpiu.c:20:13: in compound statement ('{}') CC arch-darwin-c-debug/obj/src/sys/utils/sortd.o CC arch-darwin-c-debug/obj/src/sys/utils/sorti.o clang: error: unable to execute command: Segmentation fault: 11 clang: error: clang frontend command failed due to signal (use -v to see invocation) Apple LLVM version 4.2 (clang-425.0.28) (based on LLVM 3.2svn) Target: x86_64-apple-darwin12.4.0 Thread model: posix clang: note: diagnostic msg: PLEASE submit a bug report to http://developer.apple.com/bugreporter/ and include the crash backtrace, preprocessed source, and associated run script. clang: note: diagnostic msg: ******************** PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT: Preprocessed source(s) and associated run script(s) are located at: clang: note: diagnostic msg: /var/folders/4m/zbggpg253zq_yr5lzn_53s_w0000gn/T/mpiu-DsHhNB.c clang: note: diagnostic msg: /var/folders/4m/zbggpg253zq_yr5lzn_53s_w0000gn/T/mpiu-DsHhNB.sh clang: note: diagnostic msg: ******************** make[2]: *** [arch-darwin-c-debug/obj/src/sys/utils/mpiu.o] Error 254 make[2]: *** Waiting for unfinished jobs.... make[2]: Leaving directory `/Users/balay/petsc.test' make[1]: *** [gnumake] Error 2 make[1]: Leaving directory `/Users/balay/petsc.test' [1;31m**************************ERROR************************************ Error during compile, check arch-darwin-c-debug/conf/make.log Send it and arch-darwin-c-debug/conf/configure.log to [email protected] ********************************************************************[0;39m[0;49m
