/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib This is the wrong version of MKL. You should look for lp64 variant [not ilp64]
[you can just edit PETSC_DIR/PETSC_ARCH/lib/petsc/conf/petscvariables and make this change manually - and retry compiling the example] Satish On Wed, 17 Jun 2015, Hector E Barrios Molano wrote: > Hi PETSc Experts! > > I'm trying to build PETSc on a Windows machine, I got errors during > the test part. I downloaded petsc-dev from git. > > > This are my configuration command: > > $ ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' > --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel > --with-parmetis-include=/cygdrive/c/Installed/parmetis/include > --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib > --with-metis-include=/cygdrive/c/Installed/parmetis/include > --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib > --with-mpi-include=[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64] > --with-mpi-lib=[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib] > --with-blas-lapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib] > --with-scalapack-include=/cygdrive/c/Installed/mkl/include > --with-scalapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib] > --with-sowing=0 > > > I was able con configure and compile: > > make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc > PETSC_ARCH=windows-intel all > > However, when testing I got these errors: > > $ make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc > PETSC_ARCH=windows-intel test > Running test examples to verify correct installation > Using PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc and > PETSC_ARCH=windows-intel > Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI > process > See http://www.mcs.anl.gov/petsc/documentation/faq.html > lid velocity = 0.0016, prandtl # = 1, grashof # = 1 > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, > probably memory access out of range > [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger > [0]PETSC ERROR: or see > http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac > OS X to find memory corruption errors > [0]PETSC ERROR: likely location of problem given in stack below > [0]PETSC ERROR: --------------------- Stack Frames > ------------------------------------ > [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, > [0]PETSC ERROR: INSTEAD the line number of the start of the function > [0]PETSC ERROR: is given. > [0]PETSC ERROR: [0] VecNorm_Seq line 240 > C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\impls\seq\bvec2.c > [0]PETSC ERROR: [0] VecNorm line 228 > C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\INTERF~1\rvector.c > [0]PETSC ERROR: [0] SNESSolve_NEWTONLS line 150 > C:\INSTAL~1\PETSC-~1\petsc\src\snes\impls\ls\ls.c > [0]PETSC ERROR: [0] SNESSolve line 3847 > C:\INSTAL~1\PETSC-~1\petsc\src\snes\INTERF~1\snes.c > [0]PETSC ERROR: [0] main line 108 > C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex19.c > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [0]PETSC ERROR: Signal received > [0]PETSC ERROR: See > http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble > shooting. > [0]PETSC ERROR: Petsc Development GIT revision: unknown GIT Date: unknown > [0]PETSC ERROR: ./ex19 on a windows-intel named HECTOR-PC by hector > Wed Jun 17 14:21:38 2015 > [0]PETSC ERROR: Configure options --with-cc="win32fe cl" > --with-fc="win32fe ifort" --prefix=/cygdrive/c/Installed/petsc/ > --PETSC_ARCH=windows-intel > --with-parmetis-include=/cygdrive/c/Installed/parmetis/include > --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib > --with-metis-include=/cygdrive/c/Installed/parmetis/include > --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib > --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]" > --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]" > --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]" > --with-scalapack-include=/cygdrive/c/Installed/mkl/include > --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]" > --with-sowing=0 > [0]PETSC ERROR: #1 User provided function() line 0 in unknown file > > job aborted: > [ranks] message > > [0] application aborted > aborting MPI_COMM_WORLD (comm=0x44000000), error 59, comm rank 0 > > ---- error analysis ----- > > [0] on hector-PC > ./ex19 aborted the job. abort code 59 > > ---- error analysis ----- > Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 > MPI processes > See http://www.mcs.anl.gov/petsc/documentation/faq.html > lid velocity = 0.0016, prandtl # = 1, grashof # = 1 > [0]PETSC ERROR: > [1]PETSC ERROR: > ------------------------------------------------------------------------ > ------------------------------------------------------------------------ > [0]PETSC ERROR: > [1]PETSC ERROR: > Caught signal number 11 SEGV: Segmentation Violation, probably memory > access out of range > Caught signal number 11 SEGV: Segmentation Violation, probably memory > access out of range > [0]PETSC ERROR: > [1]PETSC ERROR: > Try option -start_in_debugger or -on_error_attach_debugger > Try option -start_in_debugger or -on_error_attach_debugger > [0]PETSC ERROR: > [1]PETSC ERROR: > or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > [0]PETSC ERROR: > [1]PETSC ERROR: > or try http://valgrind.org on GNU/linux and Apple Mac OS X to find > memory corruption errors > or try http://valgrind.org on GNU/linux and Apple Mac OS X to find > memory corruption errors > [0]PETSC ERROR: > [1]PETSC ERROR: > likely location of problem given in stack below > likely location of problem given in stack below > [0]PETSC ERROR: > [1]PETSC ERROR: > --------------------- Stack Frames ------------------------------------ > --------------------- Stack Frames ------------------------------------ > [0]PETSC ERROR: > [1]PETSC ERROR: > Note: The EXACT line numbers in the stack are not available, > Note: The EXACT line numbers in the stack are not available, > [0]PETSC ERROR: > [1]PETSC ERROR: > INSTEAD the line number of the start of the function > INSTEAD the line number of the start of the function > [0]PETSC ERROR: > [1]PETSC ERROR: > is given. > is given. > [0]PETSC ERROR: > [1]PETSC ERROR: > [0] VecNorm_MPI line 57 > C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\impls\mpi\pvec2.c > [1] VecNorm_MPI line 57 > C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\impls\mpi\pvec2.c > [0]PETSC ERROR: > [1]PETSC ERROR: > [0] VecNorm line 228 C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\INTERF~1\rvector.c > [1] VecNorm line 228 C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\INTERF~1\rvector.c > [0]PETSC ERROR: > [1]PETSC ERROR: > [0] SNESSolve_NEWTONLS line 150 > C:\INSTAL~1\PETSC-~1\petsc\src\snes\impls\ls\ls.c > [1] SNESSolve_NEWTONLS line 150 > C:\INSTAL~1\PETSC-~1\petsc\src\snes\impls\ls\ls.c > [0]PETSC ERROR: > [1]PETSC ERROR: > [0] SNESSolve line 3847 C:\INSTAL~1\PETSC-~1\petsc\src\snes\INTERF~1\snes.c > [1] SNESSolve line 3847 C:\INSTAL~1\PETSC-~1\petsc\src\snes\INTERF~1\snes.c > [0]PETSC ERROR: > [1]PETSC ERROR: > [0] main line 108 C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex19.c > [1] main line 108 C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex19.c > [0]PETSC ERROR: > [1]PETSC ERROR: > --------------------- Error Message > -------------------------------------------------------------- > --------------------- Error Message > -------------------------------------------------------------- > [0]PETSC ERROR: > [1]PETSC ERROR: > Signal received > Signal received > [0]PETSC ERROR: > [1]PETSC ERROR: > See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > [0]PETSC ERROR: > [1]PETSC ERROR: > Petsc Development GIT revision: unknown GIT Date: unknown > Petsc Development GIT revision: unknown GIT Date: unknown > [0]PETSC ERROR: > [1]PETSC ERROR: > ./ex19 on a windows-intel named HECTOR-PC by hector Wed Jun 17 14:21:38 2015 > ./ex19 on a windows-intel named HECTOR-PC by hector Wed Jun 17 14:21:38 2015 > [0]PETSC ERROR: > [1]PETSC ERROR: > Configure options --with-cc="win32fe cl" --with-fc="win32fe ifort" > --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel > --with-parmetis-include=/cygdrive/c/Installed/parmetis/include > --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib > --with-metis-include=/cygdrive/c/Installed/parmetis/include > --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib > --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]" > --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]" > --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]" > --with-scalapack-include=/cygdrive/c/Installed/mkl/include > --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]" > --with-sowing=0 > Configure options --with-cc="win32fe cl" --with-fc="win32fe ifort" > --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel > --with-parmetis-include=/cygdrive/c/Installed/parmetis/include > --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib > --with-metis-include=/cygdrive/c/Installed/parmetis/include > --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib > --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]" > --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]" > --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]" > --with-scalapack-include=/cygdrive/c/Installed/mkl/include > --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]" > --with-sowing=0 > [0]PETSC ERROR: > [1]PETSC ERROR: > #1 User provided function() line 0 in unknown file > #1 User provided function() line 0 in unknown file > > job aborted: > [ranks] message > > [0] application aborted > aborting MPI_COMM_WORLD (comm=0x44000000), error 59, comm rank 0 > > [1] application aborted > aborting MPI_COMM_WORLD (comm=0x44000000), error 59, comm rank 1 > > ---- error analysis ----- > > [0-1] on hector-PC > ./ex19 aborted the job. abort code 59 > > ---- error analysis ----- > *******************Error detected during compile or link!******************* > See http://www.mcs.anl.gov/petsc/documentation/faq.html > /cygdrive/c/Installed/petsc-dev/petsc/src/snes/examples/tutorials ex5f > ********************************************************* > /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe ifort -c > -MT -Z7 -fpp -I/cygdrive/c/Installed/petsc-dev/petsc/include > -I/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/include > -I/cygdrive/c/Installed/parmetis/include > -I/cygdrive/c/Installed/msmpi/Include > -I/cygdrive/c/Installed/msmpi/Include/x64 -o ex5f.o ex5f.F > /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe ifort -MT > -Z7 -fpp -o ex5f ex5f.o > -L/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/lib -lpetsc > /cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib > /cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib > /cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib > /cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib > /cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib > /cygdrive/c/Installed/parmetis/lib/parmetis.lib > /cygdrive/c/Installed/parmetis/lib/metis.lib > /cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib > /cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib Gdi32.lib User32.lib > Advapi32.lib Kernel32.lib Ws2_32.lib > ex5f.obj : error LNK2019: unresolved external symbol SNESCREATE > referenced in function MAIN__ > ex5f.obj : error LNK2019: unresolved external symbol > DMCREATEGLOBALVECTOR referenced in function MAIN__ > ex5f.obj : error LNK2019: unresolved external symbol VECDUPLICATE > referenced in function MAIN__ > ex5f.obj : error LNK2019: unresolved external symbol DMDAGETCORNERS > referenced in function MAIN__ > ex5f.obj : error LNK2019: unresolved external symbol > DMDAGETGHOSTCORNERS referenced in function MAIN__ > ex5f.obj : error LNK2019: unresolved external symbol SNESSETDM > referenced in function MAIN__ > ex5f.obj : error LNK2019: unresolved external symbol > SNESSETFROMOPTIONS referenced in function MAIN__ > ex5f.obj : error LNK2019: unresolved external symbol > SNESGETITERATIONNUMBER referenced in function MAIN__ > ex5f.obj : error LNK2019: unresolved external symbol VECDESTROY > referenced in function MAIN__ > ex5f.obj : error LNK2019: unresolved external symbol SNESDESTROY > referenced in function MAIN__ > ex5f.obj : error LNK2019: unresolved external symbol DMDESTROY > referenced in function MAIN__ > ex5f.obj : error LNK2019: unresolved external symbol MATSETVALUESLOCAL > referenced in function FORMJACOBIANLOCAL > ex5f.obj : error LNK2019: unresolved external symbol MATASSEMBLYBEGIN > referenced in function FORMJACOBIANLOCAL > ex5f.obj : error LNK2019: unresolved external symbol MATASSEMBLYEND > referenced in function FORMJACOBIANLOCAL > C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex5f.exe : fatal > error LNK1120: 14 unresolved externals > makefile:50: recipe for target 'ex5f' failed > make[3]: [ex5f] Error 96 (ignored) > /usr/bin/rm -f ex5f.o > Completed test examples > ========================================= > Now to evaluate the computer systems you plan use - do: > make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc > PETSC_ARCH=windows-intel streams NPMAX=<number of MPI processes you > intend to use> > > > Best Regards, > > Hector >
