Can you send configure.log?
Satish On Thu, 18 Jun 2015, Hector E Barrios Molano wrote: > Hi Satish and Matt, > > I just cloned it again and I'm still having the same problem: > > $ ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' > --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel > --with-parmetis-include=/cygdrive/c/Installed/parmetis/include > --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib > --with-metis-include=/cygdrive/c/Installed/parmetis/include > --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib > --with-mpi-include=[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64] > --with-mpi-lib=[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib] > --with-blas-lapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib] > --with-scalapack-include=/cygdrive/c/Installed/mkl/include > --with-scalapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_lp64.lib] > =============================================================================== > Configuring PETSc to compile on your system > =============================================================================== > =============================================================================== > > > *****WARNING: > PETSC_DIR appears to be a Git clone - but git is not found in > PATH******** > > > =============================================================================== > > =============================================================================== > Trying to > download > http://ftp.mcs.anl.gov/pub/petsc/externalpackages/sowing-1.1.17-p1.tar.gz > for SOWING > =============================================================================== > > =============================================================================== > Running > configure on SOWING; this may take several minutes > > =============================================================================== > > =============================================================================== > Running > make on SOWING; this may take several minutes > > =============================================================================== > > =============================================================================== > Running > make install on SOWING; this may take several minutes > > =============================================================================== > TESTING: > checkSharedLibrary from > config.packages.sowing(config/BuildSystem/config/package.py:625) > > ******************************************************************************* > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log > for details): > ------------------------------------------------------------------------------- > *******Error generating Fortran stubs: Error running bfort > cd /cygdrive/c/Installed/petsc-dev/petsc/include; > BFORT_CONFIG_PATH=/cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf > /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/bin/bfort -dir > /cygdrive/c/Installed/petsc-dev/petsc/include/ftn-auto -mnative -ansi > -nomsgs -noprofile -anyname -mapptr -mpi -mpi2 -ferr -ptrprefix Petsc > -ptr64 PETSC_USE_POINTER_CONVERSION -fcaps PETSC_HAVE_FORTRAN_CAPS > -fuscore PETSC_HAVE_FORTRAN_UNDERSCORE -f90mod_skip_header -f90modfile > f90module.f90 petsc.h petscao.h petscbag.h petscblaslapack.h > petscblaslapack_c.h petscblaslapack_caps.h petscblaslapack_stdcall.h > petscblaslapack_uscore.h petscbt.h petsccharacteristic.h petscctable.h > petsccusp.h petscdm.h petscdmcomposite.h petscdmda.h petscdmdatypes.h > petscdmmoab.h petscdmnetwork.h petscdmpatch.h petscdmplex.h > petscdmredundant.h petscdmshell.h petscdmsliced.h petscdmtypes.h > petscdraw.h petscdrawtypes.h petscds.h petscdstypes.h petscdt.h > petscerror.h petscfe.h petscfetypes.h petscfv.h petscfvtypes.h > petscis.h petscistypes.h petscksp.h petsclog.h petscmat.h > petscmatelemental.h petscmath.h petscmatlab.h petscoptions.h petscpc.h > petscpctypes.h petscpf.h petscsf.h petscsftypes.h petscsnes.h > petscsys.h petsctao.h petsctaolinesearch.h petsctime.h petscts.h > petscvalgrind.h petscvec.h petscversion.h petscviennacl.h > petscviewer.h petscviewerhdf5.h petscviewersaws.h petscviewertypes.h > petscwebclient.h > Testing path as file /cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf > Testing file > /cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf/bfort-base.txt > Testing file /cygdrive/c/Installed/petsc-dev/petsc/include/bfort-base.txt > Testing path as file /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share > Testing file > /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share/bfort-base.txt > Testing file /cygdrive/c/Installed/petsc-dev/petsc/include/bfort-base.txt > Unable to find bfort-base.txt config file in > /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share******* > ******************************************************************************* > > > Hector > > On Thu, Jun 18, 2015 at 1:46 PM, Satish Balay <[email protected]> wrote: > > On Thu, 18 Jun 2015, Matthew Knepley wrote: > > > >> On Thu, Jun 18, 2015 at 12:09 PM, Hector E Barrios Molano < > >> [email protected]> wrote: > >> > >> > yes I cloned it from git. > >> > > >> > >> There appears to be a problem with your clone. Can you clone it again? > > > > The following is equivalent to a fresh clone [without needing the extra > > network traffic] > > > > rm -rf arch* > > git clean -f -d -x > > > > Satish > > > > > >> > >> Thanks, > >> > >> Matt > >> > >> > >> > On Thu, Jun 18, 2015 at 12:06 PM, Matthew Knepley <[email protected]> > >> > wrote: > >> > > On Thu, Jun 18, 2015 at 11:57 AM, Hector E Barrios Molano > >> > > <[email protected]> wrote: > >> > >> > >> > >> Hi Satish, > >> > >> > >> > >> Now I'm getting this error. Why its trying to use "bfort"? > >> > > > >> > > > >> > > When using a clone, it tries to run 'bfort'. Are you trying to use a > >> > clone? > >> > > > >> > > Thanks, > >> > > > >> > > Matt > >> > > > >> > >> > >> > >> Thank you, > >> > >> > >> > >> > >> > >> $ ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' > >> > >> --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel > >> > >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include > >> > >> --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib > >> > >> --with-metis-include=/cygdrive/c/Installed/parmetis/include > >> > >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib > >> > >> > >> > >> > >> > --with-mpi-include=[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64] > >> > >> > >> > >> > >> > --with-mpi-lib=[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib] > >> > >> > >> > >> > >> > --with-blas-lapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib] > >> > >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include > >> > >> > >> > >> > >> > --with-scalapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_lp64.lib] > >> > >> > >> > >> > >> > =============================================================================== > >> > >> Configuring PETSc to compile on your system > >> > >> > >> > >> > >> > =============================================================================== > >> > >> > >> > >> > >> > =============================================================================== > >> > >> > >> > >> > >> > >> *****WARNING: > >> > >> PETSC_DIR appears to be a Git clone - but git is not found in > >> > >> PATH******** > >> > >> > >> > >> > >> > >> > >> > >> > >> > =============================================================================== > >> > >> > >> > >> > >> > >> > >> > =============================================================================== > >> > >> Running > >> > >> configure on SOWING; this may take several minutes > >> > >> > >> > >> > >> > >> > >> > =============================================================================== > >> > >> > >> > >> > >> > >> > >> > =============================================================================== > >> > >> Running > >> > >> make on SOWING; this may take several minutes > >> > >> > >> > >> > >> > >> > >> > =============================================================================== > >> > >> > >> > >> > >> > >> > >> > =============================================================================== > >> > >> Running > >> > >> make install on SOWING; this may take several minutes > >> > >> > >> > >> > >> > >> > >> > =============================================================================== > >> > >> TESTING: > >> > >> checkSharedLibrary from > >> > >> config.packages.sowing(config/BuildSystem/config/package.py:625) > >> > >> > >> > >> > >> > >> > >> > ******************************************************************************* > >> > >> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log > >> > >> for details): > >> > >> > >> > >> > >> > ------------------------------------------------------------------------------- > >> > >> *******Error generating Fortran stubs: Error running bfort > >> > >> cd /cygdrive/c/Installed/petsc-dev/petsc/include; > >> > >> BFORT_CONFIG_PATH=/cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf > >> > >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/bin/bfort -dir > >> > >> /cygdrive/c/Installed/petsc-dev/petsc/include/ftn-auto -mnative -ansi > >> > >> -nomsgs -noprofile -anyname -mapptr -mpi -mpi2 -ferr -ptrprefix Petsc > >> > >> -ptr64 PETSC_USE_POINTER_CONVERSION -fcaps PETSC_HAVE_FORTRAN_CAPS > >> > >> -fuscore PETSC_HAVE_FORTRAN_UNDERSCORE -f90mod_skip_header -f90modfile > >> > >> f90module.f90 petsc.h petscao.h petscbag.h petscblaslapack.h > >> > >> petscblaslapack_c.h petscblaslapack_caps.h petscblaslapack_stdcall.h > >> > >> petscblaslapack_uscore.h petscbt.h petsccharacteristic.h petscctable.h > >> > >> petsccusp.h petscdm.h petscdmcomposite.h petscdmda.h petscdmdatypes.h > >> > >> petscdmmoab.h petscdmnetwork.h petscdmpatch.h petscdmplex.h > >> > >> petscdmredundant.h petscdmshell.h petscdmsliced.h petscdmtypes.h > >> > >> petscdraw.h petscdrawtypes.h petscds.h petscdstypes.h petscdt.h > >> > >> petscerror.h petscfe.h petscfetypes.h petscfv.h petscfvtypes.h > >> > >> petscis.h petscistypes.h petscksp.h petsclog.h petscmat.h > >> > >> petscmatelemental.h petscmath.h petscmatlab.h petscoptions.h petscpc.h > >> > >> petscpctypes.h petscpf.h petscsf.h petscsftypes.h petscsnes.h > >> > >> petscsys.h petsctao.h petsctaolinesearch.h petsctime.h petscts.h > >> > >> petscvalgrind.h petscvec.h petscversion.h petscviennacl.h > >> > >> petscviewer.h petscviewerhdf5.h petscviewersaws.h petscviewertypes.h > >> > >> petscwebclient.h > >> > >> Testing path as file > >> > /cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf > >> > >> Testing file > >> > >> /cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf/bfort-base.txt > >> > >> Testing file > >> > /cygdrive/c/Installed/petsc-dev/petsc/include/bfort-base.txt > >> > >> Testing path as file > >> > >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share > >> > >> Testing file > >> > >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share/bfort-base.txt > >> > >> Testing file > >> > /cygdrive/c/Installed/petsc-dev/petsc/include/bfort-base.txt > >> > >> Unable to find bfort-base.txt config file in > >> > >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share******* > >> > >> > >> > >> > >> > ******************************************************************************* > >> > >> > >> > >> Hector > >> > >> > >> > >> On Wed, Jun 17, 2015 at 5:16 PM, Satish Balay <[email protected]> > >> > wrote: > >> > >> > Hm - perhaps you have a different 'find' command in your path. What > >> > >> > do > >> > >> > you have for: > >> > >> > > >> > >> > which find > >> > >> > > >> > >> > Try: > >> > >> > > >> > >> > export PATH=/usr/bin:${PATH} > >> > >> > > >> > >> > and rerun configure > >> > >> > > >> > >> > We should look at replacing all shell code with python equivalent.. > >> > >> > > >> > >> > Satish > >> > >> > > >> > >> > On Wed, 17 Jun 2015, Hector E Barrios Molano wrote: > >> > >> > > >> > >> >> Hi Satish, > >> > >> >> > >> > >> >> Taking out --with-sowing=0 gives me: > >> > >> >> > >> > >> >> $ ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' > >> > >> >> --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel > >> > >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include > >> > >> >> --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib > >> > >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include > >> > >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib > >> > >> >> > >> > >> >> > >> > --with-mpi-include=[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64] > >> > >> >> > >> > >> >> > >> > --with-mpi-lib=[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib] > >> > >> >> > >> > >> >> > >> > --with-blas-lapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib] > >> > >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include > >> > >> >> > >> > >> >> > >> > --with-scalapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_lp64.lib] > >> > >> >> > >> > >> >> > >> > =============================================================================== > >> > >> >> Configuring PETSc to compile on your system > >> > >> >> > >> > >> >> > >> > =============================================================================== > >> > >> >> > >> > >> >> > >> > =============================================================================== > >> > >> >> > >> > >> >> > >> > >> >> *****WARNING: > >> > >> >> PETSC_DIR appears to be a Git clone - but git is not found in > >> > >> >> PATH******** > >> > >> >> > >> > >> >> > >> > >> >> > >> > >> >> > >> > =============================================================================== > >> > >> >> > >> > >> >> > >> > >> >> > >> > =============================================================================== > >> > >> >> Trying > >> > >> >> to > >> > >> >> download > >> > >> >> > >> > http://ftp.mcs.anl.gov/pub/petsc/externalpackages/sowing-1.1.17-p1.tar.gz > >> > >> >> for SOWING > >> > >> >> > >> > >> >> > >> > =============================================================================== > >> > >> >> > >> > >> >> > >> > >> >> > >> > =============================================================================== > >> > >> >> Trying > >> > >> >> to > >> > >> >> download > >> > >> >> > >> > ftp://ftp.mcs.anl.gov/pub/petsc/externalpackages/sowing-1.1.17-p1.tar.gz > >> > >> >> for SOWING > >> > >> >> > >> > >> >> > >> > =============================================================================== > >> > >> >> > >> > >> >> > >> > >> >> > >> > >> >> > >> > >> >> > >> > ******************************************************************************* > >> > >> >> UNABLE to CONFIGURE with GIVEN OPTIONS (see > >> > >> >> configure.log > >> > >> >> for details): > >> > >> >> > >> > >> >> > >> > ------------------------------------------------------------------------------- > >> > >> >> Error changing permissions for sowing-1.1.17-p1 obtained from > >> > >> >> > >> > >> >> > >> > /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/externalpackages/_d_sowing-1.1.17-p1.tar.gz > >> > >> >> : Could not execute "cd > >> > >> >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/externalpackages; > >> > >> >> chmod -R a+r sowing-1.1.17-p1;find sowing-1.1.17-p1 -type d -name > >> > "*" > >> > >> >> -exec chmod a+rx {} \;": > >> > >> >> FIND: Parameter format not correct > >> > >> >> Error changing permissions for sowing-1.1.17-p1 obtained from > >> > >> >> > >> > >> >> > >> > /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/externalpackages/_d_sowing-1.1.17-p1.tar.gz > >> > >> >> : Could not execute "cd > >> > >> >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/externalpackages; > >> > >> >> chmod -R a+r sowing-1.1.17-p1;find sowing-1.1.17-p1 -type d -name > >> > "*" > >> > >> >> -exec chmod a+rx {} \;": > >> > >> >> FIND: Parameter format not correct > >> > >> >> > >> > >> >> > >> > ******************************************************************************* > >> > >> >> > >> > >> >> On Wed, Jun 17, 2015 at 3:36 PM, Satish Balay <[email protected]> > >> > >> >> wrote: > >> > >> >> >> --with-sowing=0 > >> > >> >> > > >> > >> >> > 1. make sure you have cygwin gcc/g++ installed. > >> > >> >> > 2. configure PETSc without the above option [and rebuild the > >> > >> >> > libraries] > >> > >> >> > > >> > >> >> > Satish > >> > >> >> > > >> > >> >> > On Wed, 17 Jun 2015, Hector E Barrios Molano wrote: > >> > >> >> > > >> > >> >> >> Hi Satish, > >> > >> >> >> > >> > >> >> >> Thank you! It solved some errors. However, I'm still having > >> > problems > >> > >> >> >> with the Fortran test. > >> > >> >> >> > >> > >> >> >> $ make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc > >> > >> >> >> PETSC_ARCH=windows-intel test > >> > >> >> >> Running test examples to verify correct installation > >> > >> >> >> Using PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc and > >> > >> >> >> PETSC_ARCH=windows-intel > >> > >> >> >> C/C++ example src/snes/examples/tutorials/ex19 run successfully > >> > with > >> > >> >> >> 1 > >> > >> >> >> MPI process > >> > >> >> >> C/C++ example src/snes/examples/tutorials/ex19 run successfully > >> > with > >> > >> >> >> 2 > >> > >> >> >> MPI processes > >> > >> >> >> *******************Error detected during compile or > >> > >> >> >> link!******************* > >> > >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html > >> > >> >> >> /cygdrive/c/Installed/petsc-dev/petsc/src/snes/examples/tutorials > >> > >> >> >> ex5f > >> > >> >> >> ********************************************************* > >> > >> >> >> /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe ifort > >> > >> >> >> -c > >> > >> >> >> -MT -Z7 -fpp -I/cygdrive/c/Installed/petsc-dev/petsc/include > >> > >> >> >> -I/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/include > >> > >> >> >> -I/cygdrive/c/Installed/parmetis/include > >> > >> >> >> -I/cygdrive/c/Installed/msmpi/Include > >> > >> >> >> -I/cygdrive/c/Installed/msmpi/Include/x64 -o ex5f.o ex5f.F > >> > >> >> >> /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe ifort > >> > -MT > >> > >> >> >> -Z7 -fpp -o ex5f ex5f.o > >> > >> >> >> -L/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/lib > >> > >> >> >> -lpetsc > >> > >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_lp64.lib > >> > >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_lp64.lib > >> > >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_lp64.lib > >> > >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib > >> > >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib > >> > >> >> >> /cygdrive/c/Installed/parmetis/lib/parmetis.lib > >> > >> >> >> /cygdrive/c/Installed/parmetis/lib/metis.lib > >> > >> >> >> /cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib > >> > >> >> >> /cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib Gdi32.lib > >> > >> >> >> User32.lib > >> > >> >> >> Advapi32.lib Kernel32.lib Ws2_32.lib > >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol SNESCREATE > >> > >> >> >> referenced in function MAIN__ > >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> DMCREATEGLOBALVECTOR referenced in function MAIN__ > >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> VECDUPLICATE > >> > >> >> >> referenced in function MAIN__ > >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > DMDAGETCORNERS > >> > >> >> >> referenced in function MAIN__ > >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> DMDAGETGHOSTCORNERS referenced in function MAIN__ > >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol SNESSETDM > >> > >> >> >> referenced in function MAIN__ > >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> SNESSETFROMOPTIONS referenced in function MAIN__ > >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> SNESGETITERATIONNUMBER referenced in function MAIN__ > >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol VECDESTROY > >> > >> >> >> referenced in function MAIN__ > >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol SNESDESTROY > >> > >> >> >> referenced in function MAIN__ > >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol DMDESTROY > >> > >> >> >> referenced in function MAIN__ > >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> MATSETVALUESLOCAL > >> > >> >> >> referenced in function FORMJACOBIANLOCAL > >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> MATASSEMBLYBEGIN > >> > >> >> >> referenced in function FORMJACOBIANLOCAL > >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > MATASSEMBLYEND > >> > >> >> >> referenced in function FORMJACOBIANLOCAL > >> > >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex5f.exe : > >> > >> >> >> fatal > >> > >> >> >> error LNK1120: 14 unresolved externals > >> > >> >> >> makefile:50: recipe for target 'ex5f' failed > >> > >> >> >> make[3]: [ex5f] Error 96 (ignored) > >> > >> >> >> /usr/bin/rm -f ex5f.o > >> > >> >> >> Completed test examples > >> > >> >> >> ========================================= > >> > >> >> >> Now to evaluate the computer systems you plan use - do: > >> > >> >> >> make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc > >> > >> >> >> PETSC_ARCH=windows-intel streams NPMAX=<number of MPI processes > >> > you > >> > >> >> >> intend to use> > >> > >> >> >> > >> > >> >> >> On Wed, Jun 17, 2015 at 3:01 PM, Satish Balay > >> > >> >> >> <[email protected]> > >> > >> >> >> wrote: > >> > >> >> >> > /cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib > >> > >> >> >> > > >> > >> >> >> > This is the wrong version of MKL. You should look for lp64 > >> > variant > >> > >> >> >> > [not ilp64] > >> > >> >> >> > > >> > >> >> >> > [you can just edit > >> > >> >> >> > PETSC_DIR/PETSC_ARCH/lib/petsc/conf/petscvariables and make > >> > >> >> >> > this > >> > >> >> >> > change manually - and retry compiling the example] > >> > >> >> >> > > >> > >> >> >> > Satish > >> > >> >> >> > > >> > >> >> >> > On Wed, 17 Jun 2015, Hector E Barrios Molano wrote: > >> > >> >> >> > > >> > >> >> >> >> Hi PETSc Experts! > >> > >> >> >> >> > >> > >> >> >> >> I'm trying to build PETSc on a Windows machine, I got errors > >> > >> >> >> >> during > >> > >> >> >> >> the test part. I downloaded petsc-dev from git. > >> > >> >> >> >> > >> > >> >> >> >> > >> > >> >> >> >> This are my configuration command: > >> > >> >> >> >> > >> > >> >> >> >> $ ./configure --with-cc='win32fe cl' --with-fc='win32fe > >> > >> >> >> >> ifort' > >> > >> >> >> >> --prefix=/cygdrive/c/Installed/petsc/ > >> > --PETSC_ARCH=windows-intel > >> > >> >> >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib > >> > >> >> >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include > >> > >> >> >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-mpi-include=[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64] > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-mpi-lib=[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib] > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-blas-lapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib] > >> > >> >> >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-scalapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib] > >> > >> >> >> >> --with-sowing=0 > >> > >> >> >> >> > >> > >> >> >> >> > >> > >> >> >> >> I was able con configure and compile: > >> > >> >> >> >> > >> > >> >> >> >> make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc > >> > >> >> >> >> PETSC_ARCH=windows-intel all > >> > >> >> >> >> > >> > >> >> >> >> However, when testing I got these errors: > >> > >> >> >> >> > >> > >> >> >> >> $ make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc > >> > >> >> >> >> PETSC_ARCH=windows-intel test > >> > >> >> >> >> Running test examples to verify correct installation > >> > >> >> >> >> Using PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc and > >> > >> >> >> >> PETSC_ARCH=windows-intel > >> > >> >> >> >> Possible error running C/C++ src/snes/examples/tutorials/ex19 > >> > >> >> >> >> with 1 MPI process > >> > >> >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html > >> > >> >> >> >> lid velocity = 0.0016, prandtl # = 1, grashof # = 1 > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> > >> > >> >> >> >> > >> > ------------------------------------------------------------------------ > >> > >> >> >> >> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation > >> > >> >> >> >> Violation, > >> > >> >> >> >> probably memory access out of range > >> > >> >> >> >> [0]PETSC ERROR: Try option -start_in_debugger or > >> > >> >> >> >> -on_error_attach_debugger > >> > >> >> >> >> [0]PETSC ERROR: or see > >> > >> >> >> >> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > >> > >> >> >> >> [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and > >> > Apple > >> > >> >> >> >> Mac > >> > >> >> >> >> OS X to find memory corruption errors > >> > >> >> >> >> [0]PETSC ERROR: likely location of problem given in stack > >> > >> >> >> >> below > >> > >> >> >> >> [0]PETSC ERROR: --------------------- Stack Frames > >> > >> >> >> >> ------------------------------------ > >> > >> >> >> >> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are > >> > not > >> > >> >> >> >> available, > >> > >> >> >> >> [0]PETSC ERROR: INSTEAD the line number of the start of > >> > the > >> > >> >> >> >> function > >> > >> >> >> >> [0]PETSC ERROR: is given. > >> > >> >> >> >> [0]PETSC ERROR: [0] VecNorm_Seq line 240 > >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\impls\seq\bvec2.c > >> > >> >> >> >> [0]PETSC ERROR: [0] VecNorm line 228 > >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\INTERF~1\rvector.c > >> > >> >> >> >> [0]PETSC ERROR: [0] SNESSolve_NEWTONLS line 150 > >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\impls\ls\ls.c > >> > >> >> >> >> [0]PETSC ERROR: [0] SNESSolve line 3847 > >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\INTERF~1\snes.c > >> > >> >> >> >> [0]PETSC ERROR: [0] main line 108 > >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex19.c > >> > >> >> >> >> [0]PETSC ERROR: --------------------- Error Message > >> > >> >> >> >> -------------------------------------------------------------- > >> > >> >> >> >> [0]PETSC ERROR: Signal received > >> > >> >> >> >> [0]PETSC ERROR: See > >> > >> >> >> >> http://www.mcs.anl.gov/petsc/documentation/faq.html for > >> > trouble > >> > >> >> >> >> shooting. > >> > >> >> >> >> [0]PETSC ERROR: Petsc Development GIT revision: unknown GIT > >> > >> >> >> >> Date: unknown > >> > >> >> >> >> [0]PETSC ERROR: ./ex19 on a windows-intel named HECTOR-PC by > >> > >> >> >> >> hector > >> > >> >> >> >> Wed Jun 17 14:21:38 2015 > >> > >> >> >> >> [0]PETSC ERROR: Configure options --with-cc="win32fe cl" > >> > >> >> >> >> --with-fc="win32fe ifort" > >> > >> >> >> >> --prefix=/cygdrive/c/Installed/petsc/ > >> > >> >> >> >> --PETSC_ARCH=windows-intel > >> > >> >> >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib > >> > >> >> >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include > >> > >> >> >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]" > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]" > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]" > >> > >> >> >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]" > >> > >> >> >> >> --with-sowing=0 > >> > >> >> >> >> [0]PETSC ERROR: #1 User provided function() line 0 in > >> > >> >> >> >> unknown > >> > >> >> >> >> file > >> > >> >> >> >> > >> > >> >> >> >> job aborted: > >> > >> >> >> >> [ranks] message > >> > >> >> >> >> > >> > >> >> >> >> [0] application aborted > >> > >> >> >> >> aborting MPI_COMM_WORLD (comm=0x44000000), error 59, comm > >> > >> >> >> >> rank > >> > 0 > >> > >> >> >> >> > >> > >> >> >> >> ---- error analysis ----- > >> > >> >> >> >> > >> > >> >> >> >> [0] on hector-PC > >> > >> >> >> >> ./ex19 aborted the job. abort code 59 > >> > >> >> >> >> > >> > >> >> >> >> ---- error analysis ----- > >> > >> >> >> >> Possible error running C/C++ src/snes/examples/tutorials/ex19 > >> > >> >> >> >> with 2 > >> > >> >> >> >> MPI processes > >> > >> >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html > >> > >> >> >> >> lid velocity = 0.0016, prandtl # = 1, grashof # = 1 > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> > >> > >> >> >> >> > >> > ------------------------------------------------------------------------ > >> > >> >> >> >> > >> > >> >> >> >> > >> > ------------------------------------------------------------------------ > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> Caught signal number 11 SEGV: Segmentation Violation, > >> > >> >> >> >> probably > >> > >> >> >> >> memory > >> > >> >> >> >> access out of range > >> > >> >> >> >> Caught signal number 11 SEGV: Segmentation Violation, > >> > >> >> >> >> probably > >> > >> >> >> >> memory > >> > >> >> >> >> access out of range > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> Try option -start_in_debugger or -on_error_attach_debugger > >> > >> >> >> >> Try option -start_in_debugger or -on_error_attach_debugger > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> or see > >> > >> >> >> >> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > >> > >> >> >> >> or see > >> > >> >> >> >> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> or try http://valgrind.org on GNU/linux and Apple Mac OS X to > >> > >> >> >> >> find > >> > >> >> >> >> memory corruption errors > >> > >> >> >> >> or try http://valgrind.org on GNU/linux and Apple Mac OS X to > >> > >> >> >> >> find > >> > >> >> >> >> memory corruption errors > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> likely location of problem given in stack below > >> > >> >> >> >> likely location of problem given in stack below > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> --------------------- Stack Frames > >> > >> >> >> >> ------------------------------------ > >> > >> >> >> >> --------------------- Stack Frames > >> > >> >> >> >> ------------------------------------ > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> Note: The EXACT line numbers in the stack are not available, > >> > >> >> >> >> Note: The EXACT line numbers in the stack are not available, > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> INSTEAD the line number of the start of the function > >> > >> >> >> >> INSTEAD the line number of the start of the function > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> is given. > >> > >> >> >> >> is given. > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> [0] VecNorm_MPI line 57 > >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\impls\mpi\pvec2.c > >> > >> >> >> >> [1] VecNorm_MPI line 57 > >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\impls\mpi\pvec2.c > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> [0] VecNorm line 228 > >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\INTERF~1\rvector.c > >> > >> >> >> >> [1] VecNorm line 228 > >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\INTERF~1\rvector.c > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> [0] SNESSolve_NEWTONLS line 150 > >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\impls\ls\ls.c > >> > >> >> >> >> [1] SNESSolve_NEWTONLS line 150 > >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\impls\ls\ls.c > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> [0] SNESSolve line 3847 > >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\INTERF~1\snes.c > >> > >> >> >> >> [1] SNESSolve line 3847 > >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\INTERF~1\snes.c > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> [0] main line 108 > >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex19.c > >> > >> >> >> >> [1] main line 108 > >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex19.c > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> --------------------- Error Message > >> > >> >> >> >> -------------------------------------------------------------- > >> > >> >> >> >> --------------------- Error Message > >> > >> >> >> >> -------------------------------------------------------------- > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> Signal received > >> > >> >> >> >> Signal received > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html for > >> > >> >> >> >> trouble shooting. > >> > >> >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html for > >> > >> >> >> >> trouble shooting. > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> Petsc Development GIT revision: unknown GIT Date: unknown > >> > >> >> >> >> Petsc Development GIT revision: unknown GIT Date: unknown > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> ./ex19 on a windows-intel named HECTOR-PC by hector Wed Jun > >> > >> >> >> >> 17 > >> > >> >> >> >> 14:21:38 2015 > >> > >> >> >> >> ./ex19 on a windows-intel named HECTOR-PC by hector Wed Jun > >> > >> >> >> >> 17 > >> > >> >> >> >> 14:21:38 2015 > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> Configure options --with-cc="win32fe cl" --with-fc="win32fe > >> > >> >> >> >> ifort" > >> > >> >> >> >> --prefix=/cygdrive/c/Installed/petsc/ > >> > --PETSC_ARCH=windows-intel > >> > >> >> >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib > >> > >> >> >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include > >> > >> >> >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]" > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]" > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]" > >> > >> >> >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]" > >> > >> >> >> >> --with-sowing=0 > >> > >> >> >> >> Configure options --with-cc="win32fe cl" --with-fc="win32fe > >> > >> >> >> >> ifort" > >> > >> >> >> >> --prefix=/cygdrive/c/Installed/petsc/ > >> > --PETSC_ARCH=windows-intel > >> > >> >> >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib > >> > >> >> >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include > >> > >> >> >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]" > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]" > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]" > >> > >> >> >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include > >> > >> >> >> >> > >> > >> >> >> >> > >> > --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]" > >> > >> >> >> >> --with-sowing=0 > >> > >> >> >> >> [0]PETSC ERROR: > >> > >> >> >> >> [1]PETSC ERROR: > >> > >> >> >> >> #1 User provided function() line 0 in unknown file > >> > >> >> >> >> #1 User provided function() line 0 in unknown file > >> > >> >> >> >> > >> > >> >> >> >> job aborted: > >> > >> >> >> >> [ranks] message > >> > >> >> >> >> > >> > >> >> >> >> [0] application aborted > >> > >> >> >> >> aborting MPI_COMM_WORLD (comm=0x44000000), error 59, comm > >> > >> >> >> >> rank > >> > 0 > >> > >> >> >> >> > >> > >> >> >> >> [1] application aborted > >> > >> >> >> >> aborting MPI_COMM_WORLD (comm=0x44000000), error 59, comm > >> > >> >> >> >> rank > >> > 1 > >> > >> >> >> >> > >> > >> >> >> >> ---- error analysis ----- > >> > >> >> >> >> > >> > >> >> >> >> [0-1] on hector-PC > >> > >> >> >> >> ./ex19 aborted the job. abort code 59 > >> > >> >> >> >> > >> > >> >> >> >> ---- error analysis ----- > >> > >> >> >> >> *******************Error detected during compile or > >> > >> >> >> >> link!******************* > >> > >> >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html > >> > >> >> >> >> > >> > /cygdrive/c/Installed/petsc-dev/petsc/src/snes/examples/tutorials > >> > >> >> >> >> ex5f > >> > >> >> >> >> ********************************************************* > >> > >> >> >> >> /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe > >> > >> >> >> >> ifort > >> > >> >> >> >> -c > >> > >> >> >> >> -MT -Z7 -fpp -I/cygdrive/c/Installed/petsc-dev/petsc/include > >> > >> >> >> >> -I/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/include > >> > >> >> >> >> -I/cygdrive/c/Installed/parmetis/include > >> > >> >> >> >> -I/cygdrive/c/Installed/msmpi/Include > >> > >> >> >> >> -I/cygdrive/c/Installed/msmpi/Include/x64 -o ex5f.o ex5f.F > >> > >> >> >> >> /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe > >> > >> >> >> >> ifort > >> > >> >> >> >> -MT > >> > >> >> >> >> -Z7 -fpp -o ex5f ex5f.o > >> > >> >> >> >> -L/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/lib > >> > >> >> >> >> -lpetsc > >> > >> >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib > >> > >> >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib > >> > >> >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib > >> > >> >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib > >> > >> >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib > >> > >> >> >> >> /cygdrive/c/Installed/parmetis/lib/parmetis.lib > >> > >> >> >> >> /cygdrive/c/Installed/parmetis/lib/metis.lib > >> > >> >> >> >> /cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib > >> > >> >> >> >> /cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib Gdi32.lib > >> > >> >> >> >> User32.lib > >> > >> >> >> >> Advapi32.lib Kernel32.lib Ws2_32.lib > >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> >> SNESCREATE > >> > >> >> >> >> referenced in function MAIN__ > >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> >> DMCREATEGLOBALVECTOR referenced in function MAIN__ > >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > VECDUPLICATE > >> > >> >> >> >> referenced in function MAIN__ > >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> >> DMDAGETCORNERS > >> > >> >> >> >> referenced in function MAIN__ > >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> >> DMDAGETGHOSTCORNERS referenced in function MAIN__ > >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> >> SNESSETDM > >> > >> >> >> >> referenced in function MAIN__ > >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> >> SNESSETFROMOPTIONS referenced in function MAIN__ > >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> >> SNESGETITERATIONNUMBER referenced in function MAIN__ > >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> >> VECDESTROY > >> > >> >> >> >> referenced in function MAIN__ > >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > SNESDESTROY > >> > >> >> >> >> referenced in function MAIN__ > >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> >> DMDESTROY > >> > >> >> >> >> referenced in function MAIN__ > >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> >> MATSETVALUESLOCAL > >> > >> >> >> >> referenced in function FORMJACOBIANLOCAL > >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> >> MATASSEMBLYBEGIN > >> > >> >> >> >> referenced in function FORMJACOBIANLOCAL > >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol > >> > >> >> >> >> MATASSEMBLYEND > >> > >> >> >> >> referenced in function FORMJACOBIANLOCAL > >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex5f.exe > >> > : > >> > >> >> >> >> fatal > >> > >> >> >> >> error LNK1120: 14 unresolved externals > >> > >> >> >> >> makefile:50: recipe for target 'ex5f' failed > >> > >> >> >> >> make[3]: [ex5f] Error 96 (ignored) > >> > >> >> >> >> /usr/bin/rm -f ex5f.o > >> > >> >> >> >> Completed test examples > >> > >> >> >> >> ========================================= > >> > >> >> >> >> Now to evaluate the computer systems you plan use - do: > >> > >> >> >> >> make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc > >> > >> >> >> >> PETSC_ARCH=windows-intel streams NPMAX=<number of MPI > >> > >> >> >> >> processes > >> > >> >> >> >> you > >> > >> >> >> >> intend to use> > >> > >> >> >> >> > >> > >> >> >> >> > >> > >> >> >> >> Best Regards, > >> > >> >> >> >> > >> > >> >> >> >> Hector > >> > >> >> >> >> > >> > >> >> >> > > >> > >> >> >> > >> > >> >> > > >> > >> >> > >> > >> > > >> > > > >> > > > >> > > > >> > > > >> > > -- > >> > > What most experimenters take for granted before they begin their > >> > experiments > >> > > is infinitely more interesting than any results to which their > >> > experiments > >> > > lead. > >> > > -- Norbert Wiener > >> > > >> > >> > >> > >> > > >
