Yep, I am fixing that too. Matt
On Wed, Jan 18, 2017 at 10:36 AM, Satish Balay <[email protected]> wrote: > On Mac - with prgmatic 'master' - I get: > > /usr/local/Cellar/cmake/3.7.1/bin/cmake -E cmake_link_script > CMakeFiles/jpeg2mesh.dir/link.txt --verbose=1 > /usr/bin/g++ -fstack-protector -g -std=c++11 -Wno-literal-suffix > -Wno-deprecated -DEIGEN_NO_DEBUG -Wl,-search_paths_first > -Wl,-headerpad_max_install_names > CMakeFiles/jpeg2mesh.dir/tools/jpeg2mesh.cpp.o > CMakeFiles/jpeg2mesh.dir/src/mpi_tools.cpp.o > CMakeFiles/jpeg2mesh.dir/src/ticker.cpp.o > -o bin/jpeg2mesh -lrt > [ 92%] Linking CXX executable bin/coarsen_mesh_3d > /usr/local/Cellar/cmake/3.7.1/bin/cmake -E cmake_link_script > CMakeFiles/coarsen_mesh_3d.dir/link.txt --verbose=1 > /usr/bin/g++ -fstack-protector -g -std=c++11 -Wno-literal-suffix > -Wno-deprecated -DEIGEN_NO_DEBUG -Wl,-search_paths_first > -Wl,-headerpad_max_install_names CMakeFiles/coarsen_mesh_3d. > dir/tools/coarsen_mesh_3d.cpp.o CMakeFiles/coarsen_mesh_3d. > dir/src/generate_Steiner_ellipse_3d.cpp.o > CMakeFiles/coarsen_mesh_3d.dir/src/mpi_tools.cpp.o > CMakeFiles/coarsen_mesh_3d.dir/src/ticker.cpp.o -o bin/coarsen_mesh_3d > -lrt > [100%] Linking CXX shared library lib/libpragmatic.dylib > <snip> > ld: library not found for -lrt > clang: error: linker command failed with exit code 1 (use -v to see > invocation) > > Satish > > > On Wed, 18 Jan 2017, Matthew Knepley wrote: > > > Yep, I am updating that (since it pointed to a branch that got munged), > and > > in doing so I wanted o fix this aswell. > > > > Matt > > > > On Wed, Jan 18, 2017 at 10:32 AM, Satish Balay <[email protected]> > wrote: > > > > > BTW: wrong self.gitcommit in pragmatic.py? > > > > > > Satish > > > > > > ------- > > > > > > > > > balay@asterix /home/balay/petsc (master=) > > > $ ./configure --with-mpi=0 --download-metis --download-eigen > > > --download-pragmatic PETSC_ARCH=arch-pragmatic > > > ============================================================ > > > =================== > > > Configuring PETSc to compile on your system > > > ============================================================ > > > =================== > > > ============================================================ > =================== > > > > > > Trying to download hg://https://bitbucket.org/ > > > eigen/eigen/ for EIGEN > > > > ============================== > > > ================================================= > > > > > > ============================================================ > =================== > > > > > > Configuring EIGEN with cmake, this may take several > > > minutes > > > ============================== > > > ================================================= > > > > > > ============================================================ > =================== > > > > > > Compiling and installing EIGEN; this may take several > > > minutes > > > ============================== > > > ================================================= > > > > > > ============================================================ > =================== > > > > > > Trying to download git://https://bitbucket.org/ > > > petsc/pkg-metis.git for METIS > > > > ============================== > > > ================================================= > > > > > > ============================================================ > =================== > > > > > > Configuring METIS with cmake, this may take several > > > minutes > > > ============================== > > > ================================================= > > > > > > ============================================================ > =================== > > > > > > Compiling and installing METIS; this may take several > > > minutes > > > ============================== > > > ================================================= > > > > > > ============================================================ > =================== > > > > > > Trying to download git://https://github.com/ > > > meshadaptation/pragmatic.git for PRAGMATIC > > > > ============================== > > > ================================================= > > > > > > > > > > > > ************************************************************ > > > ******************* > > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log > for > > > details): > > > ------------------------------------------------------------ > > > ------------------- > > > Unable to checkout commit: 2efa91b32a3b9954083ddf96f2ee81889906543c in > > > repository: /home/balay/petsc/arch-pragmatic/externalpackages/ > > > git.pragmatic. > > > Perhaps its a git error! > > > ************************************************************ > > > ******************* > > > > > > > > > > > > > > > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener
