Mark,
On tulip, things with fortran went wonky when a `-fast` flag snuck into the flags (snuck in being me copying a previous configure file and not questioning the flags). The reason is that for clang, `-fast` implies link time optimization (lto) for C/C++ code, but flang doesn't support lto so things got weird. I suspect that gfortran does not either (but perhaps the real question is why not use flang?) I look at configure and I don't see anything in your flags that would trigger lto, but as Junchao says, it might be picking something up from Kokkos, so perhaps this is the issue. Scott On 2021-07-19 07:19, Mark Adams did write: > Thanks, but this happens w/o Kokkos. > I've stripped this down and attached good/bad logs without/with Fortran > bindings. > Hope this helps, > Thanks again, > Mark > > On Sun, Jul 18, 2021 at 12:00 PM Stefano Zampini <stefano.zamp...@gmail.com> > wrote: > > > This is probably kokkos pulling in the dependencies where compiling kokkos > > source within PETSc. > > > > Il Dom 18 Lug 2021, 16:29 Mark Adams <mfad...@lbl.gov> ha scritto: > > > >> Whoops, this error was just from not telling gfortran to allow long lines. > >> > >> Anway, I did find that the when fortran bindings are enabled this OMP > >> thing gets into the library. No idea how. I'll askm ORNL. > >> > >> 10:26 jczhang/fix-cray-mpicxx-includes/main= > >> /gpfs/alpine/csc314/scratch/adams/petsc2$ nm > >> /gpfs/alpine/csc314/scratch/adams/petsc2/arch-spock-opt-cray-kokkos/lib/libpetsc.so > >> |g offload > >> U .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa > >> U .omp_offloading.img_size.cray_amdgcn-amd-amdhsa > >> U .omp_offloading.img_start.cray_amdgcn-amd-amdhsa > >> 0000000001d457b0 T vecgetoffloadmask_ > >> > >> > >> On Sun, Jul 18, 2021 at 8:43 AM Mark Adams <mfad...@lbl.gov> wrote: > >> > >>> Ah, your test was not on Spock ... I have something working but this is > >>> strange. > >>> > >>> I switched to the GNU ProgEnv. and it passed the Fortran test in > >>> 'check', but this failed: > >>> > >>> > >>> > >>> > >>> > >>> > >>> > >>> > >>> > >>> *08:26 2 jczhang/fix-cray-mpicxx-includes/main= > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ make > >>> PETSC_DIR=/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu > >>> PETSC_ARCH="" ex40f90ftn -L/sw/spock/spack-envs/views/rocm-4.1.0/lib > >>> -lamdhip64 -lhsa-runtime64 -fPIC -g -O0 -fPIC -g -O0 > >>> > >>> -I/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/include > >>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include ex40f90.F90 > >>> > >>> -Wl,-rpath,/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/lib > >>> -L/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/lib > >>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib > >>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib > >>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/gnu/9.1/lib > >>> -L/opt/cray/pe/mpich/8.1.4/ofi/gnu/9.1/lib > >>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib > >>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib > >>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/GNU/9.1/x86_64/lib > >>> <http://21.04.1.1/GNU/9.1/x86_64/lib> > >>> -L/opt/cray/pe/libsci/21.04.1.1/GNU/9.1/x86_64/lib > >>> <http://21.04.1.1/GNU/9.1/x86_64/lib> > >>> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib -L/opt/cray/pe/pmi/6.0.10/lib > >>> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib/gcc/x86_64-suse-linux/10.2.0 > >>> -L/opt/gcc/10.2.0/snos/lib/gcc/x86_64-suse-linux/10.2.0 > >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib64 -L/opt/gcc/10.2.0/snos/lib64 > >>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/llvm/lib > >>> -L/sw/spock/spack-envs/views/rocm-4.1.0/llvm/lib > >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib -L/opt/gcc/10.2.0/snos/lib -lpetsc > >>> -lhipsparse -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 > >>> -lhsa-runtime64 -lstdc++ -ldl -lpmi -lmpi_gtl_hsa -lxpmem -lgfortran -lm > >>> -lsci_gnu_82_mpi -lsci_gnu_82 -lmpifort_gnu_91 -lmpi_gnu_91 -ldsmml > >>> -lgfortran -lquadmath -lpthread -lm -lgcc_s -lquadmath -lstdc++ -ldl -o > >>> ex40f90ex40f90.F90:35:132: 35 | call > >>> DMDACreate2d(PETSC_COMM_WORLD,DM_BOUNDARY_NONE,DM_BOUNDARY_NONE,DMDA_STENCIL_BOX,ten,ten,PETSC_DECIDE,PETSC_DECIDE,two,one, > >>> & | > >>> 1Error: > >>> Line truncated at (1) [-Werror=line-truncation]ex40f90.F90:35:132:* > >>> * ....* > >>> > >>> But ex5f (the Fortran check test) does work manually also (sanity check). > >>> > >>> Oddly I seem to have the cray compilers: > >>> > >>> 08:34 jczhang/fix-cray-mpicxx-includes/main= > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ which ftn > >>> /opt/cray/pe/craype/2.7.6/bin/ftn > >>> > >>> yet it is GNU: > >>> > >>> 08:34 jczhang/fix-cray-mpicxx-includes/main= > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ ftn --version > >>> GNU Fortran (GCC) 10.2.0 20200723 (Cray Inc.) > >>> Copyright (C) 2020 Free Software Foundation, Inc. > >>> This is free software; see the source for copying conditions. There is > >>> NO > >>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR > >>> PURPOSE. > >>> > >>> The documentation says ftn should be here: > >>> > >>> 08:34 jczhang/fix-cray-mpicxx-includes/main= > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ > >>> $GCC_PATH/bin/gfortran --version > >>> GNU Fortran (GCC) 10.2.0 20200723 (Cray Inc.) > >>> Copyright (C) 2020 Free Software Foundation, Inc. > >>> This is free software; see the source for copying conditions. There is > >>> NO > >>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR > >>> PURPOSE. > >>> > >>> Same, but the path is not the same: > >>> > >>> 08:39 jczhang/fix-cray-mpicxx-includes/main= > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ echo $GCC_PATH > >>> /opt/gcc/10.2.0 > >>> > >>> Anyway, thanks for your help, > >>> Mark > >>> > >>> On Sat, Jul 17, 2021 at 11:26 PM Junchao Zhang <junchao.zh...@gmail.com> > >>> wrote: > >>> > >>>> Mark, I can reproduce this error with PrgEnv-cray, i.e., using the > >>>> Cray compiler (clang-11). Previously I used PrgEnv-gnu, which did not > >>>> have > >>>> this error. > >>>> Probably it is a problem of Spock. But I am not sure. > >>>> > >>>> --Junchao Zhang > >>>> > >>>> > >>>> On Sat, Jul 17, 2021 at 10:17 AM Mark Adams <mfad...@lbl.gov> wrote: > >>>> > >>>>> And I can run a fortran test, with warnings, but C tests fail: > >>>>> > >>>>> 11:15 jczhang/fix-cray-mpicxx-includes/main= > >>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ make > >>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc > >>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos -f gmakefile test > >>>>> search='ts_utils_dmplexlandau_tutorials-ex1f90_0' > >>>>> Using MAKEFLAGS: -- search=ts_utils_dmplexlandau_tutorials-ex1f90_0 > >>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos > >>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc > >>>>> FC > >>>>> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o > >>>>> FLINKER > >>>>> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90 > >>>>> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: > >>>>> warning: alignment 128 of symbol > >>>>> `$host_init$$runtime_init_for_iso_c_binding$iso_c_binding_' in > >>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller than > >>>>> 256 in > >>>>> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o > >>>>> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: > >>>>> warning: alignment 64 of symbol `$data_init$iso_c_binding_' in > >>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller than > >>>>> 256 in > >>>>> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o > >>>>> TEST > >>>>> arch-spock-opt-cray-kokkos/tests/counts/ts_utils_dmplexlandau_tutorials-ex1f90_0.counts > >>>>> ok ts_utils_dmplexlandau_tutorials-ex1f90_0 > >>>>> ok diff-ts_utils_dmplexlandau_tutorials-ex1f90_0 > >>>>> > >>>>> > >>>>> On Sat, Jul 17, 2021 at 10:53 AM Mark Adams <mfad...@lbl.gov> wrote: > >>>>> > >>>>>> HUmm, I can not reproduce this. > >>>>>> > >>>>>> 10:49 jczhang/fix-cray-mpicxx-includes/main= > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ make > >>>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc > >>>>>> PETSC_ARCH=arch-spock-dbg-kokkos check > >>>>>> Running check examples to verify correct installation > >>>>>> Using PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc and > >>>>>> PETSC_ARCH=arch-spock-dbg-kokkos > >>>>>> gmake[3]: > >>>>>> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/rules:301: > >>>>>> ex19.PETSc] Error 2 (ignored) > >>>>>> *******************Error detected during compile or > >>>>>> link!******************* > >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex19 > >>>>>> > >>>>>> ********************************************************************************* > >>>>>> cc -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64 > >>>>>> -lhsa-runtime64 -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing > >>>>>> -Wno-unknown-pragmas -fstack-protector -Qunused-arguments > >>>>>> -fvisibility=hidden -g -O0 -fPIC -Wall -Wwrite-strings > >>>>>> -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector > >>>>>> -Qunused-arguments -fvisibility=hidden -g -O0 > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include > >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/include > >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include ex19.c > >>>>>> > >>>>>> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >>>>>> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >>>>>> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >>>>>> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib > >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64 > >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib > >>>>>> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib > >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib > >>>>>> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib > >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib > >>>>>> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib > >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore -lhipsparse > >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 -lhsa-runtime64 > >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray -lmpi_cray > >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath -lcrayacc_amdgpu > >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran -lpthread > >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64 > >>>>>> -lquadmath -lstdc++ -ldl -o ex19 > >>>>>> ld.lld: error: > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: > >>>>>> undefined reference to .omp_offloading.img_start.cray_amdgcn-amd-amdhsa > >>>>>> [--no-allow-shlib-undefined] > >>>>>> ld.lld: error: > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: > >>>>>> undefined reference to .omp_offloading.img_size.cray_amdgcn-amd-amdhsa > >>>>>> [--no-allow-shlib-undefined] > >>>>>> ld.lld: error: > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: > >>>>>> undefined reference to .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa > >>>>>> [--no-allow-shlib-undefined] > >>>>>> clang-11: error: linker command failed with exit code 1 (use -v to > >>>>>> see invocation) > >>>>>> gmake[4]: *** [<builtin>: ex19] Error 1 > >>>>>> gmake[3]: > >>>>>> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/rules:301: > >>>>>> ex3k.PETSc] Error 2 (ignored) > >>>>>> *******************Error detected during compile or > >>>>>> link!******************* > >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex3k > >>>>>> > >>>>>> ********************************************************************************* > >>>>>> hipcc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing > >>>>>> -Wno-unknown-pragmas -fvisibility=hidden -g -O0 -std=c++14 > >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/include > >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include > >>>>>> -I/opt/cray/pe/libsci/ > >>>>>> 21.04.1.1/CRAY/9.0/x86_64/include > >>>>>> -I/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/include > >>>>>> -I/opt/cray/pe/pmi/6.0.10/include > >>>>>> -I/opt/cray/pe/dsmml/0.1.4/dsmml//include > >>>>>> -I/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/include > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib -L/opt/cray/pe/pmi/6.0.10/lib > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml//lib > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib/pkgconfig/../ > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >>>>>> -Wl,--as-needed,-lsci_cray_mpi,--no-as-needed > >>>>>> -Wl,--as-needed,-lsci_cray,--no-as-needed > >>>>>> -Wl,--as-needed,-lmpi_cray,--no-as-needed > >>>>>> -Wl,--as-needed,-ldsmml,--no-as-needed > >>>>>> -Wl,--as-needed,-lpgas-shmem,--no-as-needed -lpmi -ldl -lmpi_gtl_hsa > >>>>>> -lxpmem -lquadmath -lmodules -lfi -lcraymath -lf -lu -lcsup > >>>>>> ex3k.kokkos.cxx > >>>>>> > >>>>>> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >>>>>> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >>>>>> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >>>>>> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib > >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64 > >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib > >>>>>> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib > >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib > >>>>>> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib > >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib > >>>>>> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib > >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore -lhipsparse > >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 -lhsa-runtime64 > >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray -lmpi_cray > >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath -lcrayacc_amdgpu > >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran -lpthread > >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64 > >>>>>> -lquadmath -lstdc++ -ldl -o ex3k > >>>>>> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: > >>>>>> undefined reference to > >>>>>> `.omp_offloading.img_size.cray_amdgcn-amd-amdhsa' > >>>>>> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: > >>>>>> undefined reference to > >>>>>> `.omp_offloading.img_start.cray_amdgcn-amd-amdhsa' > >>>>>> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: > >>>>>> undefined reference to > >>>>>> `.omp_offloading.img_cache.cray_amdgcn-amd-amdhsa' > >>>>>> clang-12: error: linker command failed with exit code 1 (use -v to > >>>>>> see invocation) > >>>>>> gmake[4]: *** > >>>>>> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/test:26: ex3k] > >>>>>> Error 1 > >>>>>> gmake[3]: [makefile:102: runex3k_kokkos] Error 2 (ignored) > >>>>>> 1,25c1,4 > >>>>>> < atol=1e-50, rtol=1e-08, stol=1e-08, maxit=50, maxf=10000 > >>>>>> < Vec Object: Exact Solution 2 MPI processes > >>>>>> < type: mpikokkos > >>>>>> < Process [0] > >>>>>> < 0. > >>>>>> < 0.015625 > >>>>>> < 0.125 > >>>>>> < Process [1] > >>>>>> < 0.421875 > >>>>>> < 1. > >>>>>> < Vec Object: Forcing function 2 MPI processes > >>>>>> < type: mpikokkos > >>>>>> < Process [0] > >>>>>> < 1e-72 > >>>>>> < 1.50024 > >>>>>> < 3.01563 > >>>>>> < Process [1] > >>>>>> < 4.67798 > >>>>>> < 7. > >>>>>> < 0 SNES Function norm 5.414682427127e+00 > >>>>>> < 1 SNES Function norm 2.952582418265e-01 > >>>>>> < 2 SNES Function norm 4.502293658739e-04 > >>>>>> < 3 SNES Function norm 1.389665806646e-09 > >>>>>> < Number of SNES iterations = 3 > >>>>>> < Norm of error 1.49752e-10 Iterations 3 > >>>>>> --- > >>>>>> > slurmstepd: error: execve(): > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials/./ex3k: No > >>>>>> such > >>>>>> file or directory > >>>>>> > slurmstepd: error: execve(): > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials/./ex3k: No > >>>>>> such > >>>>>> file or directory > >>>>>> > srun: error: spock01: tasks 0-1: Exited with exit code 2 > >>>>>> > srun: launch/slurm: _step_signal: Terminating StepId=272979.0 > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials > >>>>>> Possible problem with ex3k running with kokkos-kernels, diffs above > >>>>>> ========================================= > >>>>>> *******************Error detected during compile or > >>>>>> link!******************* > >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex5f > >>>>>> ********************************************************* > >>>>>> ftn -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64 > >>>>>> -lhsa-runtime64 -fPIC -g -O0 -fPIC -g -O0 > >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/include > >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include ex5f.F90 > >>>>>> > >>>>>> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >>>>>> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >>>>>> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >>>>>> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib > >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64 > >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib > >>>>>> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib > >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib > >>>>>> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib > >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib > >>>>>> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib > >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore -lhipsparse > >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 -lhsa-runtime64 > >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray -lmpi_cray > >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath -lcrayacc_amdgpu > >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran -lpthread > >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64 > >>>>>> -lquadmath -lstdc++ -ldl -o ex5f > >>>>>> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: > >>>>>> warning: alignment 128 of symbol > >>>>>> `$host_init$$runtime_init_for_iso_c_binding$iso_c_binding_' in > >>>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller than > >>>>>> 256 in > >>>>>> /tmp/pe_30429/ex5f_1.o > >>>>>> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: > >>>>>> warning: alignment 64 of symbol `$data_init$iso_c_binding_' in > >>>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller than > >>>>>> 256 in > >>>>>> /tmp/pe_30429/ex5f_1.o > >>>>>> Fortran example src/snes/tutorials/ex5f run successfully with 1 MPI > >>>>>> process > >>>>>> Completed test examples > >>>>>> 10:49 jczhang/fix-cray-mpicxx-includes/main= > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ ll > >>>>>> > >>>>>> On Fri, Jul 16, 2021 at 11:28 PM Junchao Zhang < > >>>>>> junchao.zh...@gmail.com> wrote: > >>>>>> > >>>>>>> Mark, I configured with Fortran binding enabled with main + MR !4175 > >>>>>>> <https://gitlab.com/petsc/petsc/-/merge_requests/4175> > >>>>>>> > >>>>>>> '--with-mpiexec=srun', > >>>>>>> '--with-shared-libraries=1', > >>>>>>> '--with-cc=cc', > >>>>>>> '--with-cxx=CC', > >>>>>>> '--with-fc=ftn', > >>>>>>> '--with-fortran-bindings', > >>>>>>> '--with-hip', > >>>>>>> '--with-hipc=hipcc', > >>>>>>> '--with-debugging', > >>>>>>> '--CPPFLAGS=-I${ROCM_PATH}/include', > >>>>>>> '--CXXPPFLAGS=-I${ROCM_PATH}/include', > >>>>>>> '--CC_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64 -lhsa-runtime64', > >>>>>>> '--CXX_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64 -lhsa-runtime64', > >>>>>>> '--FC_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64 -lhsa-runtime64', > >>>>>>> '--COPTFLAGS=-g -O0', > >>>>>>> '--CXXOPTFLAGS=-g -O0', > >>>>>>> '--FOPTFLAGS=-g -O0', > >>>>>>> '--download-kokkos', > >>>>>>> '--download-kokkos-kernels', > >>>>>>> '--download-kokkos-commit=3.4.01', > >>>>>>> '--download-kokkos-kernels-commit=3.4.01', > >>>>>>> '--with-kokkos-hip-arch=VEGA908', > >>>>>>> > >>>>>>> and 'make check' ran smoothly on a compute node > >>>>>>> > >>>>>>> $ make check > >>>>>>> Running check examples to verify correct installation > >>>>>>> Using PETSC_DIR=/ccs/home/jczhang/petsc and > >>>>>>> PETSC_ARCH=arch-spock-cray-kokkos-dbg > >>>>>>> C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI > >>>>>>> process > >>>>>>> C/C++ example src/snes/tutorials/ex19 run successfully with 2 MPI > >>>>>>> processes > >>>>>>> C/C++ example src/snes/tutorials/ex3k run successfully with > >>>>>>> kokkos-kernels > >>>>>>> Fortran example src/snes/tutorials/ex5f run successfully with 1 MPI > >>>>>>> process > >>>>>>> > >>>>>>> Completed test examples > >>>>>>> > >>>>>>> > >>>>>>> --Junchao Zhang > >>>>>>> > >>>>>>> > >>>>>>> On Fri, Jul 16, 2021 at 6:04 PM Mark Adams <mfad...@lbl.gov> wrote: > >>>>>>> > >>>>>>>> And I find that this error, on non-Kokkos C tests, is fixed by > >>>>>>>> turning the fortran bindings off: > >>>>>>>> > >>>>>>>> ld.lld: error: > >>>>>>>> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so: > >>>>>>>> undefined reference to > >>>>>>>> .omp_offloading.img_start.cray_amdgcn-amd-amdhsa > >>>>>>>> [--no-allow-shlib-undefined] > >>>>>>>> ld.lld: error: > >>>>>>>> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so: > >>>>>>>> undefined reference to > >>>>>>>> .omp_offloading.img_size.cray_amdgcn-amd-amdhsa > >>>>>>>> [--no-allow-shlib-undefined] > >>>>>>>> ld.lld: error: > >>>>>>>> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so: > >>>>>>>> undefined reference to > >>>>>>>> .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa > >>>>>>>> [--no-allow-shlib-undefined] > >>>>>>>> > >>>>>>>> On Fri, Jul 16, 2021 at 3:53 PM Mark Adams <mfad...@lbl.gov> wrote: > >>>>>>>> > >>>>>>>>> Not complex. THis has some overlap with my problem w/o Kokkos. > >>>>>>>>> > >>>>>>>>> On Fri, Jul 16, 2021 at 12:54 PM Junchao Zhang < > >>>>>>>>> junchao.zh...@gmail.com> wrote: > >>>>>>>>> > >>>>>>>>>> Do you use complex? post your configure.log. > >>>>>>>>>> > >>>>>>>>>> --Junchao Zhang > >>>>>>>>>> > >>>>>>>>>> > >>>>>>>>>> On Fri, Jul 16, 2021 at 9:47 AM Mark Adams <mfad...@lbl.gov> > >>>>>>>>>> wrote: > >>>>>>>>>> > >>>>>>>>>>> The simple Kokkos example is failing for me on Spock. > >>>>>>>>>>> Any ideas? > >>>>>>>>>>> Thanks, > >>>>>>>>>>> > >>>>>>>>>>> 10:44 main *= > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ make > >>>>>>>>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc > >>>>>>>>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos ex3k > >>>>>>>>>>> MPICH_CXX="hipcc" OMPI_CXX="hipcc" CC > >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lhsa-runtime64 > >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64 > >>>>>>>>>>> -lhsa-runtime64 > >>>>>>>>>>> -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas > >>>>>>>>>>> -fstack-protector -fvisibility=hidden -g -O2 -fPIC -Wall > >>>>>>>>>>> -Wwrite-strings > >>>>>>>>>>> -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g > >>>>>>>>>>> -O3 > >>>>>>>>>>> -std=c++14 -I/gpfs/alpine/csc314/scratch/adams/petsc/include > >>>>>>>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/include > >>>>>>>>>>> -I/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include > >>>>>>>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include > >>>>>>>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include > >>>>>>>>>>> ex3k.kokkos.cxx > >>>>>>>>>>> > >>>>>>>>>>> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/lib > >>>>>>>>>>> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/lib > >>>>>>>>>>> -Wl,-rpath,/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib > >>>>>>>>>>> -L/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib > >>>>>>>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib > >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib > >>>>>>>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64 > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib > >>>>>>>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >>>>>>>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib > >>>>>>>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib > >>>>>>>>>>> -L/opt/cray/pe/pmi/6.0.10/lib > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >>>>>>>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib > >>>>>>>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib > >>>>>>>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >>>>>>>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux > >>>>>>>>>>> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux > >>>>>>>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > >>>>>>>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib > >>>>>>>>>>> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib > >>>>>>>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore > >>>>>>>>>>> -lhipsparse > >>>>>>>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 > >>>>>>>>>>> -lhsa-runtime64 > >>>>>>>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray > >>>>>>>>>>> -lmpi_cray > >>>>>>>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath > >>>>>>>>>>> -lcrayacc_amdgpu > >>>>>>>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran > >>>>>>>>>>> -lpthread > >>>>>>>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64 > >>>>>>>>>>> -lquadmath -lstdc++ -ldl -o ex3k > >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212: > >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:259:11: > >>>>>>>>>>> error: no member named 'lock_address_host_space' in namespace > >>>>>>>>>>> 'Kokkos::Impl::Kokkos::Impl'; did you mean simply > >>>>>>>>>>> 'lock_address_host_space'? > >>>>>>>>>>> while (!Impl::lock_address_host_space((void*)dest)) > >>>>>>>>>>> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > >>>>>>>>>>> lock_address_host_space > >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_HostSpace.hpp:83:6: > >>>>>>>>>>> note: 'lock_address_host_space' declared here > >>>>>>>>>>> bool lock_address_host_space(void* ptr); > >>>>>>>>>>> ^ > >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212: > >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:261:3: > >>>>>>>>>>> error: no member named 'memory_fence' in namespace > >>>>>>>>>>> 'Kokkos::Impl::Kokkos'; > >>>>>>>>>>> did you mean simply 'memory_fence'? > >>>>>>>>>>> Kokkos::memory_fence(); > >>>>>>>>>>> ^~~~~~~~~~~~~~~~~~~~ > >>>>>>>>>>> memory_fence > >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Memory_Fence.hpp:53:6: > >>>>>>>>>>> note: 'memory_fence' declared here > >>>>>>>>>>> void memory_fence() { > >>>>>>>>>>> ^ > >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47: > >>>>>>>>>>> In file included from > >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212: > >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:277:3: > >>>>>>>>>>> error: no member named 'memory_fence' in namespace > >>>>>>>>>>> 'Kokkos::Impl::Kokkos'; > >>>>>>>>>>> did you mean simply 'memory_fence'? > >>>>>>>>>>> Kokkos::memory_fence(); > >>>>>>>>>>> ^~~~~~~~~~~~~~~~~~~~ > >>>>>>>>>>> memory_fence > >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Memory_Fence.hpp:53:6: > >>>>>>>>>>> note: 'memory_fence' declared here > >>>>>>>>>>> void memory_fence() { > >>>>>>>>>>> ^ > >>>>>>>>>>> > >>>>>>>>>> -- Scott Kruger Tech-X Corporation kru...@txcorp.com 5621 Arapahoe Ave, Suite A Phone: (720) 466-3196 Boulder, CO 80303 Fax: (303) 448-7756
