Cray puts the runtime somewhere and then uses their library to put it in. I should have mentioned this earlier, but we have config/examples/arch-olcf-frontier-hip-beta.py
for trying to keep up with Cray's default hip, but I think it's different than what Junchao does for Kokkos which is why I didn't mention it earlier. Scott On 2021-07-20 11:26, Mark Adams did write: > OK, it looks like this flag caused the problem and does not seem to be > necessary: > > '--LDFLAGS=-L'+os.environ['ROCM_PATH']+'/lib -lhsa-runtime64', > > On Tue, Jul 20, 2021 at 9:00 AM Mark Adams <mfad...@lbl.gov> wrote: > > > > > > > On Mon, Jul 19, 2021 at 6:41 PM Scott Kruger <kru...@txcorp.com> wrote: > > > >> > >> Mark, > >> > >> On tulip, things with fortran went wonky when a `-fast` flag snuck into > >> the flags (snuck in being me copying a previous configure file and not > >> questioning the flags). The reason is that for clang, `-fast` implies > >> link time optimization (lto) for C/C++ code, but flang doesn't support > >> lto so things got weird. I suspect that gfortran does not either (but > >> perhaps the real question is why not use flang?) > >> > > > > It does work with GNU. I am doing this for an application and I want to > > avoid dictating the program env. > > > > I'm (re)trying with -O0 just to check. > > > > > >> > >> I look at configure and I don't see anything in your flags that would > >> trigger lto, but as Junchao says, it might be picking something up from > >> Kokkos, so perhaps this is the issue. > >> > >> > > The configure files that I sent did not have Kokkos. They were stripped > > down. > > > > I have asked ORNL, but don't expect help. > > The person (Matt) that is helping me for other things is very helpful so > > perhaps he can come up with some ideas. > > Otherwise I will tell the app that they need to use GNU for now. > > > > Thanks, > > Mark > > > > > > > >> Scott > >> > >> > >> On 2021-07-19 07:19, Mark Adams did write: > >> > Thanks, but this happens w/o Kokkos. > >> > I've stripped this down and attached good/bad logs without/with Fortran > >> > bindings. > >> > Hope this helps, > >> > Thanks again, > >> > Mark > >> > > >> > On Sun, Jul 18, 2021 at 12:00 PM Stefano Zampini < > >> stefano.zamp...@gmail.com> > >> > wrote: > >> > > >> > > This is probably kokkos pulling in the dependencies where compiling > >> kokkos > >> > > source within PETSc. > >> > > > >> > > Il Dom 18 Lug 2021, 16:29 Mark Adams <mfad...@lbl.gov> ha scritto: > >> > > > >> > >> Whoops, this error was just from not telling gfortran to allow long > >> lines. > >> > >> > >> > >> Anway, I did find that the when fortran bindings are enabled this OMP > >> > >> thing gets into the library. No idea how. I'll askm ORNL. > >> > >> > >> > >> 10:26 jczhang/fix-cray-mpicxx-includes/main= > >> > >> /gpfs/alpine/csc314/scratch/adams/petsc2$ nm > >> > >> > >> /gpfs/alpine/csc314/scratch/adams/petsc2/arch-spock-opt-cray-kokkos/lib/libpetsc.so > >> > >> |g offload > >> > >> U .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa > >> > >> U .omp_offloading.img_size.cray_amdgcn-amd-amdhsa > >> > >> U .omp_offloading.img_start.cray_amdgcn-amd-amdhsa > >> > >> 0000000001d457b0 T vecgetoffloadmask_ > >> > >> > >> > >> > >> > >> On Sun, Jul 18, 2021 at 8:43 AM Mark Adams <mfad...@lbl.gov> wrote: > >> > >> > >> > >>> Ah, your test was not on Spock ... I have something working but > >> this is > >> > >>> strange. > >> > >>> > >> > >>> I switched to the GNU ProgEnv. and it passed the Fortran test in > >> > >>> 'check', but this failed: > >> > >>> > >> > >>> > >> > >>> > >> > >>> > >> > >>> > >> > >>> > >> > >>> > >> > >>> > >> > >>> > >> > >>> *08:26 2 jczhang/fix-cray-mpicxx-includes/main= > >> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ make > >> > >>> > >> PETSC_DIR=/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu > >> > >>> PETSC_ARCH="" ex40f90ftn -L/sw/spock/spack-envs/views/rocm-4.1.0/lib > >> > >>> -lamdhip64 -lhsa-runtime64 -fPIC -g -O0 -fPIC -g -O0 > >> > >>> > >> -I/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/include > >> > >>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include ex40f90.F90 > >> > >>> > >> -Wl,-rpath,/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/lib > >> > >>> > >> -L/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/lib > >> > >>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib > >> > >>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib > >> > >>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/gnu/9.1/lib > >> > >>> -L/opt/cray/pe/mpich/8.1.4/ofi/gnu/9.1/lib > >> > >>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib > >> > >>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib > >> > >>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/GNU/9.1/x86_64/lib > >> > >>> <http://21.04.1.1/GNU/9.1/x86_64/lib> > >> > >>> -L/opt/cray/pe/libsci/21.04.1.1/GNU/9.1/x86_64/lib > >> > >>> <http://21.04.1.1/GNU/9.1/x86_64/lib> > >> > >>> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib -L/opt/cray/pe/pmi/6.0.10/lib > >> > >>> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >> > >>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >> > >>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >> > >>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >> > >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib/gcc/x86_64-suse-linux/10.2.0 > >> > >>> -L/opt/gcc/10.2.0/snos/lib/gcc/x86_64-suse-linux/10.2.0 > >> > >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib64 -L/opt/gcc/10.2.0/snos/lib64 > >> > >>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/llvm/lib > >> > >>> -L/sw/spock/spack-envs/views/rocm-4.1.0/llvm/lib > >> > >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib -L/opt/gcc/10.2.0/snos/lib > >> -lpetsc > >> > >>> -lhipsparse -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 > >> > >>> -lhsa-runtime64 -lstdc++ -ldl -lpmi -lmpi_gtl_hsa -lxpmem > >> -lgfortran -lm > >> > >>> -lsci_gnu_82_mpi -lsci_gnu_82 -lmpifort_gnu_91 -lmpi_gnu_91 -ldsmml > >> > >>> -lgfortran -lquadmath -lpthread -lm -lgcc_s -lquadmath -lstdc++ > >> -ldl -o > >> > >>> ex40f90ex40f90.F90:35:132: 35 | call > >> > >>> > >> DMDACreate2d(PETSC_COMM_WORLD,DM_BOUNDARY_NONE,DM_BOUNDARY_NONE,DMDA_STENCIL_BOX,ten,ten,PETSC_DECIDE,PETSC_DECIDE,two,one, > >> > >>> & | > >> > >>> > >> 1Error: > >> > >>> Line truncated at (1) [-Werror=line-truncation]ex40f90.F90:35:132:* > >> > >>> * ....* > >> > >>> > >> > >>> But ex5f (the Fortran check test) does work manually also (sanity > >> check). > >> > >>> > >> > >>> Oddly I seem to have the cray compilers: > >> > >>> > >> > >>> 08:34 jczhang/fix-cray-mpicxx-includes/main= > >> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ which > >> ftn > >> > >>> /opt/cray/pe/craype/2.7.6/bin/ftn > >> > >>> > >> > >>> yet it is GNU: > >> > >>> > >> > >>> 08:34 jczhang/fix-cray-mpicxx-includes/main= > >> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ ftn > >> --version > >> > >>> GNU Fortran (GCC) 10.2.0 20200723 (Cray Inc.) > >> > >>> Copyright (C) 2020 Free Software Foundation, Inc. > >> > >>> This is free software; see the source for copying conditions. > >> There is > >> > >>> NO > >> > >>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR > >> > >>> PURPOSE. > >> > >>> > >> > >>> The documentation says ftn should be here: > >> > >>> > >> > >>> 08:34 jczhang/fix-cray-mpicxx-includes/main= > >> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ > >> > >>> $GCC_PATH/bin/gfortran --version > >> > >>> GNU Fortran (GCC) 10.2.0 20200723 (Cray Inc.) > >> > >>> Copyright (C) 2020 Free Software Foundation, Inc. > >> > >>> This is free software; see the source for copying conditions. > >> There is > >> > >>> NO > >> > >>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR > >> > >>> PURPOSE. > >> > >>> > >> > >>> Same, but the path is not the same: > >> > >>> > >> > >>> 08:39 jczhang/fix-cray-mpicxx-includes/main= > >> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ echo > >> $GCC_PATH > >> > >>> /opt/gcc/10.2.0 > >> > >>> > >> > >>> Anyway, thanks for your help, > >> > >>> Mark > >> > >>> > >> > >>> On Sat, Jul 17, 2021 at 11:26 PM Junchao Zhang < > >> junchao.zh...@gmail.com> > >> > >>> wrote: > >> > >>> > >> > >>>> Mark, I can reproduce this error with PrgEnv-cray, i.e., using the > >> > >>>> Cray compiler (clang-11). Previously I used PrgEnv-gnu, which did > >> not have > >> > >>>> this error. > >> > >>>> Probably it is a problem of Spock. But I am not sure. > >> > >>>> > >> > >>>> --Junchao Zhang > >> > >>>> > >> > >>>> > >> > >>>> On Sat, Jul 17, 2021 at 10:17 AM Mark Adams <mfad...@lbl.gov> > >> wrote: > >> > >>>> > >> > >>>>> And I can run a fortran test, with warnings, but C tests fail: > >> > >>>>> > >> > >>>>> 11:15 jczhang/fix-cray-mpicxx-includes/main= > >> > >>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ make > >> > >>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc > >> > >>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos -f gmakefile test > >> > >>>>> search='ts_utils_dmplexlandau_tutorials-ex1f90_0' > >> > >>>>> Using MAKEFLAGS: -- > >> search=ts_utils_dmplexlandau_tutorials-ex1f90_0 > >> > >>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos > >> > >>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc > >> > >>>>> FC > >> > >>>>> > >> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o > >> > >>>>> FLINKER > >> > >>>>> > >> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90 > >> > >>>>> > >> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: > >> > >>>>> warning: alignment 128 of symbol > >> > >>>>> `$host_init$$runtime_init_for_iso_c_binding$iso_c_binding_' in > >> > >>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller > >> than 256 in > >> > >>>>> > >> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o > >> > >>>>> > >> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: > >> > >>>>> warning: alignment 64 of symbol `$data_init$iso_c_binding_' in > >> > >>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller > >> than 256 in > >> > >>>>> > >> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o > >> > >>>>> TEST > >> > >>>>> > >> arch-spock-opt-cray-kokkos/tests/counts/ts_utils_dmplexlandau_tutorials-ex1f90_0.counts > >> > >>>>> ok ts_utils_dmplexlandau_tutorials-ex1f90_0 > >> > >>>>> ok diff-ts_utils_dmplexlandau_tutorials-ex1f90_0 > >> > >>>>> > >> > >>>>> > >> > >>>>> On Sat, Jul 17, 2021 at 10:53 AM Mark Adams <mfad...@lbl.gov> > >> wrote: > >> > >>>>> > >> > >>>>>> HUmm, I can not reproduce this. > >> > >>>>>> > >> > >>>>>> 10:49 jczhang/fix-cray-mpicxx-includes/main= > >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ make > >> > >>>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc > >> > >>>>>> PETSC_ARCH=arch-spock-dbg-kokkos check > >> > >>>>>> Running check examples to verify correct installation > >> > >>>>>> Using PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc and > >> > >>>>>> PETSC_ARCH=arch-spock-dbg-kokkos > >> > >>>>>> gmake[3]: > >> > >>>>>> > >> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/rules:301: > >> > >>>>>> ex19.PETSc] Error 2 (ignored) > >> > >>>>>> *******************Error detected during compile or > >> > >>>>>> link!******************* > >> > >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html > >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex19 > >> > >>>>>> > >> > >>>>>> > >> ********************************************************************************* > >> > >>>>>> cc -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64 > >> > >>>>>> -lhsa-runtime64 -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing > >> > >>>>>> -Wno-unknown-pragmas -fstack-protector -Qunused-arguments > >> > >>>>>> -fvisibility=hidden -g -O0 -fPIC -Wall -Wwrite-strings > >> > >>>>>> -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector > >> > >>>>>> -Qunused-arguments -fvisibility=hidden -g -O0 > >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include > >> > >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/include > >> > >>>>>> > >> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include > >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include > >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include ex19.c > >> > >>>>>> > >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >> > >>>>>> > >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >> > >>>>>> > >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >> > >>>>>> > >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >> > >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib > >> > >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib > >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64 > >> > >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib > >> > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib > >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib > >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib > >> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib > >> > >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib > >> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >> > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >> > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib > >> > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib > >> > >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >> > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >> > >>>>>> > >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux > >> > >>>>>> > >> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux > >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > >> > >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > >> > >>>>>> > >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib > >> > >>>>>> > >> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib > >> > >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore > >> -lhipsparse > >> > >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 > >> -lhsa-runtime64 > >> > >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray > >> -lmpi_cray > >> > >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath > >> -lcrayacc_amdgpu > >> > >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran > >> -lpthread > >> > >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64 > >> > >>>>>> -lquadmath -lstdc++ -ldl -o ex19 > >> > >>>>>> ld.lld: error: > >> > >>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: > >> > >>>>>> undefined reference to > >> .omp_offloading.img_start.cray_amdgcn-amd-amdhsa > >> > >>>>>> [--no-allow-shlib-undefined] > >> > >>>>>> ld.lld: error: > >> > >>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: > >> > >>>>>> undefined reference to > >> .omp_offloading.img_size.cray_amdgcn-amd-amdhsa > >> > >>>>>> [--no-allow-shlib-undefined] > >> > >>>>>> ld.lld: error: > >> > >>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: > >> > >>>>>> undefined reference to > >> .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa > >> > >>>>>> [--no-allow-shlib-undefined] > >> > >>>>>> clang-11: error: linker command failed with exit code 1 (use -v > >> to > >> > >>>>>> see invocation) > >> > >>>>>> gmake[4]: *** [<builtin>: ex19] Error 1 > >> > >>>>>> gmake[3]: > >> > >>>>>> > >> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/rules:301: > >> > >>>>>> ex3k.PETSc] Error 2 (ignored) > >> > >>>>>> *******************Error detected during compile or > >> > >>>>>> link!******************* > >> > >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html > >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex3k > >> > >>>>>> > >> > >>>>>> > >> ********************************************************************************* > >> > >>>>>> hipcc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing > >> > >>>>>> -Wno-unknown-pragmas -fvisibility=hidden -g -O0 -std=c++14 > >> > >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/include > >> > >>>>>> > >> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include > >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include > >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include > >> -I/opt/cray/pe/libsci/ > >> > >>>>>> 21.04.1.1/CRAY/9.0/x86_64/include > >> > >>>>>> -I/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/include > >> > >>>>>> -I/opt/cray/pe/pmi/6.0.10/include > >> -I/opt/cray/pe/dsmml/0.1.4/dsmml//include > >> > >>>>>> -I/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/include > >> > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib > >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib -L/opt/cray/pe/pmi/6.0.10/lib > >> > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml//lib > >> > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib/pkgconfig/../ > >> > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >> > >>>>>> -Wl,--as-needed,-lsci_cray_mpi,--no-as-needed > >> > >>>>>> -Wl,--as-needed,-lsci_cray,--no-as-needed > >> > >>>>>> -Wl,--as-needed,-lmpi_cray,--no-as-needed > >> > >>>>>> -Wl,--as-needed,-ldsmml,--no-as-needed > >> > >>>>>> -Wl,--as-needed,-lpgas-shmem,--no-as-needed -lpmi -ldl > >> -lmpi_gtl_hsa > >> > >>>>>> -lxpmem -lquadmath -lmodules -lfi -lcraymath -lf -lu -lcsup > >> > >>>>>> ex3k.kokkos.cxx > >> > >>>>>> > >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >> > >>>>>> > >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >> > >>>>>> > >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >> > >>>>>> > >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >> > >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib > >> > >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib > >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64 > >> > >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib > >> > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib > >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib > >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib > >> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib > >> > >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib > >> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >> > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >> > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib > >> > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib > >> > >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >> > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >> > >>>>>> > >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux > >> > >>>>>> > >> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux > >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > >> > >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > >> > >>>>>> > >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib > >> > >>>>>> > >> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib > >> > >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore > >> -lhipsparse > >> > >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 > >> -lhsa-runtime64 > >> > >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray > >> -lmpi_cray > >> > >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath > >> -lcrayacc_amdgpu > >> > >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran > >> -lpthread > >> > >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64 > >> > >>>>>> -lquadmath -lstdc++ -ldl -o ex3k > >> > >>>>>> > >> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: > >> > >>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: > >> > >>>>>> undefined reference to > >> `.omp_offloading.img_size.cray_amdgcn-amd-amdhsa' > >> > >>>>>> > >> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: > >> > >>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: > >> > >>>>>> undefined reference to > >> `.omp_offloading.img_start.cray_amdgcn-amd-amdhsa' > >> > >>>>>> > >> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: > >> > >>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: > >> > >>>>>> undefined reference to > >> `.omp_offloading.img_cache.cray_amdgcn-amd-amdhsa' > >> > >>>>>> clang-12: error: linker command failed with exit code 1 (use -v > >> to > >> > >>>>>> see invocation) > >> > >>>>>> gmake[4]: *** > >> > >>>>>> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/test:26: > >> ex3k] > >> > >>>>>> Error 1 > >> > >>>>>> gmake[3]: [makefile:102: runex3k_kokkos] Error 2 (ignored) > >> > >>>>>> 1,25c1,4 > >> > >>>>>> < atol=1e-50, rtol=1e-08, stol=1e-08, maxit=50, maxf=10000 > >> > >>>>>> < Vec Object: Exact Solution 2 MPI processes > >> > >>>>>> < type: mpikokkos > >> > >>>>>> < Process [0] > >> > >>>>>> < 0. > >> > >>>>>> < 0.015625 > >> > >>>>>> < 0.125 > >> > >>>>>> < Process [1] > >> > >>>>>> < 0.421875 > >> > >>>>>> < 1. > >> > >>>>>> < Vec Object: Forcing function 2 MPI processes > >> > >>>>>> < type: mpikokkos > >> > >>>>>> < Process [0] > >> > >>>>>> < 1e-72 > >> > >>>>>> < 1.50024 > >> > >>>>>> < 3.01563 > >> > >>>>>> < Process [1] > >> > >>>>>> < 4.67798 > >> > >>>>>> < 7. > >> > >>>>>> < 0 SNES Function norm 5.414682427127e+00 > >> > >>>>>> < 1 SNES Function norm 2.952582418265e-01 > >> > >>>>>> < 2 SNES Function norm 4.502293658739e-04 > >> > >>>>>> < 3 SNES Function norm 1.389665806646e-09 > >> > >>>>>> < Number of SNES iterations = 3 > >> > >>>>>> < Norm of error 1.49752e-10 Iterations 3 > >> > >>>>>> --- > >> > >>>>>> > slurmstepd: error: execve(): > >> > >>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials/./ex3k: No such > >> > >>>>>> file or directory > >> > >>>>>> > slurmstepd: error: execve(): > >> > >>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials/./ex3k: No such > >> > >>>>>> file or directory > >> > >>>>>> > srun: error: spock01: tasks 0-1: Exited with exit code 2 > >> > >>>>>> > srun: launch/slurm: _step_signal: Terminating StepId=272979.0 > >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials > >> > >>>>>> Possible problem with ex3k running with kokkos-kernels, diffs > >> above > >> > >>>>>> ========================================= > >> > >>>>>> *******************Error detected during compile or > >> > >>>>>> link!******************* > >> > >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html > >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex5f > >> > >>>>>> ********************************************************* > >> > >>>>>> ftn -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64 > >> > >>>>>> -lhsa-runtime64 -fPIC -g -O0 -fPIC -g -O0 > >> > >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/include > >> > >>>>>> > >> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include > >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include ex5f.F90 > >> > >>>>>> > >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >> > >>>>>> > >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >> > >>>>>> > >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >> > >>>>>> > >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib > >> > >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib > >> > >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib > >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64 > >> > >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib > >> > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib > >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib > >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib > >> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib > >> > >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib > >> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >> > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >> > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib > >> > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib > >> > >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >> > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >> > >>>>>> > >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux > >> > >>>>>> > >> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux > >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > >> > >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > >> > >>>>>> > >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib > >> > >>>>>> > >> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib > >> > >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore > >> -lhipsparse > >> > >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 > >> -lhsa-runtime64 > >> > >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray > >> -lmpi_cray > >> > >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath > >> -lcrayacc_amdgpu > >> > >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran > >> -lpthread > >> > >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64 > >> > >>>>>> -lquadmath -lstdc++ -ldl -o ex5f > >> > >>>>>> > >> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: > >> > >>>>>> warning: alignment 128 of symbol > >> > >>>>>> `$host_init$$runtime_init_for_iso_c_binding$iso_c_binding_' in > >> > >>>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller > >> than 256 in > >> > >>>>>> /tmp/pe_30429/ex5f_1.o > >> > >>>>>> > >> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: > >> > >>>>>> warning: alignment 64 of symbol `$data_init$iso_c_binding_' in > >> > >>>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller > >> than 256 in > >> > >>>>>> /tmp/pe_30429/ex5f_1.o > >> > >>>>>> Fortran example src/snes/tutorials/ex5f run successfully with 1 > >> MPI > >> > >>>>>> process > >> > >>>>>> Completed test examples > >> > >>>>>> 10:49 jczhang/fix-cray-mpicxx-includes/main= > >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ ll > >> > >>>>>> > >> > >>>>>> On Fri, Jul 16, 2021 at 11:28 PM Junchao Zhang < > >> > >>>>>> junchao.zh...@gmail.com> wrote: > >> > >>>>>> > >> > >>>>>>> Mark, I configured with Fortran binding enabled with main + MR > >> !4175 > >> > >>>>>>> <https://gitlab.com/petsc/petsc/-/merge_requests/4175> > >> > >>>>>>> > >> > >>>>>>> '--with-mpiexec=srun', > >> > >>>>>>> '--with-shared-libraries=1', > >> > >>>>>>> '--with-cc=cc', > >> > >>>>>>> '--with-cxx=CC', > >> > >>>>>>> '--with-fc=ftn', > >> > >>>>>>> '--with-fortran-bindings', > >> > >>>>>>> '--with-hip', > >> > >>>>>>> '--with-hipc=hipcc', > >> > >>>>>>> '--with-debugging', > >> > >>>>>>> '--CPPFLAGS=-I${ROCM_PATH}/include', > >> > >>>>>>> '--CXXPPFLAGS=-I${ROCM_PATH}/include', > >> > >>>>>>> '--CC_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64 > >> -lhsa-runtime64', > >> > >>>>>>> '--CXX_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64 > >> -lhsa-runtime64', > >> > >>>>>>> '--FC_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64 > >> -lhsa-runtime64', > >> > >>>>>>> '--COPTFLAGS=-g -O0', > >> > >>>>>>> '--CXXOPTFLAGS=-g -O0', > >> > >>>>>>> '--FOPTFLAGS=-g -O0', > >> > >>>>>>> '--download-kokkos', > >> > >>>>>>> '--download-kokkos-kernels', > >> > >>>>>>> '--download-kokkos-commit=3.4.01', > >> > >>>>>>> '--download-kokkos-kernels-commit=3.4.01', > >> > >>>>>>> '--with-kokkos-hip-arch=VEGA908', > >> > >>>>>>> > >> > >>>>>>> and 'make check' ran smoothly on a compute node > >> > >>>>>>> > >> > >>>>>>> $ make check > >> > >>>>>>> Running check examples to verify correct installation > >> > >>>>>>> Using PETSC_DIR=/ccs/home/jczhang/petsc and > >> > >>>>>>> PETSC_ARCH=arch-spock-cray-kokkos-dbg > >> > >>>>>>> C/C++ example src/snes/tutorials/ex19 run successfully with 1 > >> MPI > >> > >>>>>>> process > >> > >>>>>>> C/C++ example src/snes/tutorials/ex19 run successfully with 2 > >> MPI > >> > >>>>>>> processes > >> > >>>>>>> C/C++ example src/snes/tutorials/ex3k run successfully with > >> > >>>>>>> kokkos-kernels > >> > >>>>>>> Fortran example src/snes/tutorials/ex5f run successfully with 1 > >> MPI > >> > >>>>>>> process > >> > >>>>>>> > >> > >>>>>>> Completed test examples > >> > >>>>>>> > >> > >>>>>>> > >> > >>>>>>> --Junchao Zhang > >> > >>>>>>> > >> > >>>>>>> > >> > >>>>>>> On Fri, Jul 16, 2021 at 6:04 PM Mark Adams <mfad...@lbl.gov> > >> wrote: > >> > >>>>>>> > >> > >>>>>>>> And I find that this error, on non-Kokkos C tests, is fixed by > >> > >>>>>>>> turning the fortran bindings off: > >> > >>>>>>>> > >> > >>>>>>>> ld.lld: error: > >> > >>>>>>>> > >> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so: > >> > >>>>>>>> undefined reference to > >> .omp_offloading.img_start.cray_amdgcn-amd-amdhsa > >> > >>>>>>>> [--no-allow-shlib-undefined] > >> > >>>>>>>> ld.lld: error: > >> > >>>>>>>> > >> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so: > >> > >>>>>>>> undefined reference to > >> .omp_offloading.img_size.cray_amdgcn-amd-amdhsa > >> > >>>>>>>> [--no-allow-shlib-undefined] > >> > >>>>>>>> ld.lld: error: > >> > >>>>>>>> > >> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so: > >> > >>>>>>>> undefined reference to > >> .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa > >> > >>>>>>>> [--no-allow-shlib-undefined] > >> > >>>>>>>> > >> > >>>>>>>> On Fri, Jul 16, 2021 at 3:53 PM Mark Adams <mfad...@lbl.gov> > >> wrote: > >> > >>>>>>>> > >> > >>>>>>>>> Not complex. THis has some overlap with my problem w/o Kokkos. > >> > >>>>>>>>> > >> > >>>>>>>>> On Fri, Jul 16, 2021 at 12:54 PM Junchao Zhang < > >> > >>>>>>>>> junchao.zh...@gmail.com> wrote: > >> > >>>>>>>>> > >> > >>>>>>>>>> Do you use complex? post your configure.log. > >> > >>>>>>>>>> > >> > >>>>>>>>>> --Junchao Zhang > >> > >>>>>>>>>> > >> > >>>>>>>>>> > >> > >>>>>>>>>> On Fri, Jul 16, 2021 at 9:47 AM Mark Adams <mfad...@lbl.gov> > >> > >>>>>>>>>> wrote: > >> > >>>>>>>>>> > >> > >>>>>>>>>>> The simple Kokkos example is failing for me on Spock. > >> > >>>>>>>>>>> Any ideas? > >> > >>>>>>>>>>> Thanks, > >> > >>>>>>>>>>> > >> > >>>>>>>>>>> 10:44 main *= > >> > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ > >> make > >> > >>>>>>>>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc > >> > >>>>>>>>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos ex3k > >> > >>>>>>>>>>> MPICH_CXX="hipcc" OMPI_CXX="hipcc" CC > >> > >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lhsa-runtime64 > >> > >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64 > >> -lhsa-runtime64 > >> > >>>>>>>>>>> -Wall -Wwrite-strings -Wno-strict-aliasing > >> -Wno-unknown-pragmas > >> > >>>>>>>>>>> -fstack-protector -fvisibility=hidden -g -O2 -fPIC -Wall > >> -Wwrite-strings > >> > >>>>>>>>>>> -Wno-strict-aliasing -Wno-unknown-pragmas > >> -fvisibility=hidden -g -O3 > >> > >>>>>>>>>>> -std=c++14 > >> -I/gpfs/alpine/csc314/scratch/adams/petsc/include > >> > >>>>>>>>>>> > >> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/include > >> > >>>>>>>>>>> > >> -I/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include > >> > >>>>>>>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include > >> > >>>>>>>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include > >> ex3k.kokkos.cxx > >> > >>>>>>>>>>> > >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/lib > >> > >>>>>>>>>>> > >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/lib > >> > >>>>>>>>>>> > >> -Wl,-rpath,/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib > >> > >>>>>>>>>>> > >> -L/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib > >> > >>>>>>>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib > >> > >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib > >> > >>>>>>>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 > >> -L/opt/gcc/8.1.0/snos/lib64 > >> > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/libsci/ > >> 21.04.1.1/CRAY/9.0/x86_64/lib > >> > >>>>>>>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib > >> > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >> > >>>>>>>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib > >> > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib > >> > >>>>>>>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib > >> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib > >> > >>>>>>>>>>> -L/opt/cray/pe/pmi/6.0.10/lib > >> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >> > >>>>>>>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib > >> > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib > >> > >>>>>>>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib > >> > >>>>>>>>>>> > >> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >> > >>>>>>>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 > >> > >>>>>>>>>>> > >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux > >> > >>>>>>>>>>> > >> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux > >> > >>>>>>>>>>> > >> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > >> > >>>>>>>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > >> > >>>>>>>>>>> > >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib > >> > >>>>>>>>>>> > >> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib > >> > >>>>>>>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore > >> -lhipsparse > >> > >>>>>>>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 > >> -lhsa-runtime64 > >> > >>>>>>>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray > >> -lmpifort_cray -lmpi_cray > >> > >>>>>>>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath > >> -lcrayacc_amdgpu > >> > >>>>>>>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup > >> -lgfortran -lpthread > >> > >>>>>>>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 > >> -lclang_rt.builtins-x86_64 > >> > >>>>>>>>>>> -lquadmath -lstdc++ -ldl -o ex3k > >> > >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212: > >> > >>>>>>>>>>> > >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:259:11: > >> > >>>>>>>>>>> error: no member named 'lock_address_host_space' in > >> namespace > >> > >>>>>>>>>>> 'Kokkos::Impl::Kokkos::Impl'; did you mean simply > >> 'lock_address_host_space'? > >> > >>>>>>>>>>> while (!Impl::lock_address_host_space((void*)dest)) > >> > >>>>>>>>>>> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > >> > >>>>>>>>>>> lock_address_host_space > >> > >>>>>>>>>>> > >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_HostSpace.hpp:83:6: > >> > >>>>>>>>>>> note: 'lock_address_host_space' declared here > >> > >>>>>>>>>>> bool lock_address_host_space(void* ptr); > >> > >>>>>>>>>>> ^ > >> > >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212: > >> > >>>>>>>>>>> > >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:261:3: > >> > >>>>>>>>>>> error: no member named 'memory_fence' in namespace > >> 'Kokkos::Impl::Kokkos'; > >> > >>>>>>>>>>> did you mean simply 'memory_fence'? > >> > >>>>>>>>>>> Kokkos::memory_fence(); > >> > >>>>>>>>>>> ^~~~~~~~~~~~~~~~~~~~ > >> > >>>>>>>>>>> memory_fence > >> > >>>>>>>>>>> > >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Memory_Fence.hpp:53:6: > >> > >>>>>>>>>>> note: 'memory_fence' declared here > >> > >>>>>>>>>>> void memory_fence() { > >> > >>>>>>>>>>> ^ > >> > >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47: > >> > >>>>>>>>>>> In file included from > >> > >>>>>>>>>>> > >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212: > >> > >>>>>>>>>>> > >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:277:3: > >> > >>>>>>>>>>> error: no member named 'memory_fence' in namespace > >> 'Kokkos::Impl::Kokkos'; > >> > >>>>>>>>>>> did you mean simply 'memory_fence'? > >> > >>>>>>>>>>> Kokkos::memory_fence(); > >> > >>>>>>>>>>> ^~~~~~~~~~~~~~~~~~~~ > >> > >>>>>>>>>>> memory_fence > >> > >>>>>>>>>>> > >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Memory_Fence.hpp:53:6: > >> > >>>>>>>>>>> note: 'memory_fence' declared here > >> > >>>>>>>>>>> void memory_fence() { > >> > >>>>>>>>>>> ^ > >> > >>>>>>>>>>> > >> > >>>>>>>>>> > >> > >> > >> > >> > >> -- > >> Scott Kruger > >> Tech-X Corporation kru...@txcorp.com > >> 5621 Arapahoe Ave, Suite A Phone: (720) 466-3196 > >> Boulder, CO 80303 Fax: (303) 448-7756 > >> > > -- Scott Kruger Tech-X Corporation kru...@txcorp.com 5621 Arapahoe Ave, Suite A Phone: (720) 466-3196 Boulder, CO 80303 Fax: (303) 448-7756
