Make sure your compiles have all the flags listed here.. Its best to use petsc makefile formats so that this info is automatically picked up from the petsc config files. [and not tweak user makefiles for every install of petsc..]
Satish On Fri, 12 Nov 2010, Tahar Amari wrote: > You are right. > > Here is what I got > > > timac> make getincludedirs getlinklibs > -I/Data/Poub1/petsc-3.1-p5/macx/include -I/Data/Poub1/petsc-3.1-p5/include > -I/Data/Poub1/petsc-3.1-p5/macx/include > -L/Data/Poub1/petsc-3.1-p5/macx/lib -L/Data/Poub1/petsc-3.1-p5/macx/lib > -L/Data/Poub1/petsc-3.1-p5/macx/lib -lpetsc -L/usr/X11R6/lib -lX11 > -L/Data/Poub1/petsc-3.1-p5/macx/lib -lparmetis -lmetis -lflapack -lfblas > -L/Data/Poub1/petsc-3.1-p5/macx/lib > -L/usr/lib/gcc/i686-apple-darwin10/4.2.1/x86_64 > -L/usr/lib/i686-apple-darwin10/4.2.1 -L/opt/intel/Compiler/11.1/088/lib > -L/opt/intel/Compiler/11.1/088/Frameworks/mkl/lib/em64t > -L/usr/lib/gcc/i686-apple-darwin10/4.2.1 -ldl -lpmpich -lmpich -lSystem > -lmpichf90 -lifport -lifcore -limf -lsvml -lipgo -lgcc_s.10.5 -lSystemStubs > -lmx -lirc -lpthread -ldl -lpmpich -lmpich -lSystem -ldl > > > What does it mean please for me to change in my makefiles ? > > Do you mean that I should remove any link other than -lpetsc ? > > Great thanks > > Tahar > > > > > > > > > Le 12 nov. 2010 ? 18:26, Satish Balay a ?crit : > > > Looks like you are not using PETSc makefiles - and upgrading from > > older release to petsc-3.1 > > > > Currently there is only one library for petsc [-lpetsc] > > > > Check: > > cd $PETSC_DIR > > make getincludedirs getlinklibs > > > > Satish > > > > On Fri, 12 Nov 2010, Tahar Amari wrote: > > > >> Many thanks. This is solved. > >> > >> Now at link I have the library not found. Any idea ? > >> > >> > >> -L/usr/local/petsc/macx/lib -lpetscsnes -lpetscvec -lpetscmat > >> -lpetsccontrib -lpetscts -lpetscdm -lpetscksp -lpetsc -lmpich -lpmpich > >> -lfmpich -lmpichf90 -lparmetis -lmetis -lfblas -lflapack > >> ld: library not found for -lpetscsnes > >> > >> > >> Tahar > >> > >> > >> Le 12 nov. 2010 ? 18:17, Satish Balay a ?crit : > >> > >>> Looks like this is related to the following: > >>> http://www.mcs.anl.gov/petsc/petsc-as/documentation/changes/31.html > >>> # petsc.h and petscdef.h are replaced with petscsys.h and petscsysdef.h; > >>> while petsc.h now includes ALL PETSc include files. > >>> > >>> Try removing all includes other than 'petsc.h' from your code. > >>> > >>> Satish > >>> > >>> On Fri, 12 Nov 2010, Tahar Amari wrote: > >>> > >>>> Hello, > >>>> > >>>> While compiling one of my code with ifort , I have the following error > >>>> pointing > >>>> towards petscvec.h . > >>>> > >>>> Any idea about this posssible kind of error please ? Any option of ifort > >>>> to use ? > >>>> > >>>> Many thanks > >>>> > >>>> Tahar > >>>> > >>>> > >>>> ifort -assume byterecl -I/usr/local/petsc/ -I/usr/local/petsc//include > >>>> -I/usr/local/petsc//include/finclude -I/usr/local/petsc//macx/include > >>>> -I/usr/X11R6/include/X11 -DPETSC_HAVE_PARMETIS -DPETSC_USE_DEBUG > >>>> -DPETSC_USE_LOG -DPETSC_USE_BOPT_g -DPETSC_USE_STACK > >>>> -DPETSC_AVOID_MPIF_H -c petsc.fpp > >>>> /usr/local/petsc//include/finclude/petscvec.h(10): error #6418: This > >>>> name has already been assigned a data type. [NORM_1] > >>>> integer(kind=selected_int_kind(5)) NORM_1 > >>>> > >>>> > >>>> > >>>> -------------------------------------------- > >>>> T. Amari > >>>> Centre de Physique Theorique > >>>> Ecole Polytechnique > >>>> 91128 Palaiseau Cedex France > >>>> tel : 33 1 69 33 42 52 > >>>> fax: 33 1 69 33 49 49 > >>>> email: <mailto:amari at cpht.polytechnique.fr> > >>>> URL : http://www.cpht.polytechnique.fr/cpht/amari > >>>> > >>>> > >>>> > >>>> > >>>> > >>> > >> > >> -------------------------------------------- > >> T. Amari > >> Centre de Physique Theorique > >> Ecole Polytechnique > >> 91128 Palaiseau Cedex France > >> tel : 33 1 69 33 42 52 > >> fax: 33 1 69 33 49 49 > >> email: <mailto:amari at cpht.polytechnique.fr> > >> URL : http://www.cpht.polytechnique.fr/cpht/amari > >> > >> > >> > >> > >> > > -------------------------------------------- > T. Amari > Centre de Physique Theorique > Ecole Polytechnique > 91128 Palaiseau Cedex France > tel : 33 1 69 33 42 52 > fax: 33 1 69 33 49 49 > email: <mailto:amari at cpht.polytechnique.fr> > URL : http://www.cpht.polytechnique.fr/cpht/amari > > > > >
