Hello, I got the following error message when I run my code.
Does anyone know what may be the problem? Thanks. Best, Rongliang --------------------------------------------------------------------------------------------------- ***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] == idxsum(nedges, cadjwgt) 0 91 89 91 0 [850]PETSC ERROR: ------------------------------------------------------------------------ [850]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [850]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [850]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[850]PETSCERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [850]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [850]PETSC ERROR: to get more information on the crash. [850]PETSC ERROR: --------------------- Error Message ------------------------------------ [850]PETSC ERROR: Signal received! [850]PETSC ERROR: ------------------------------------------------------------------------ [850]PETSC ERROR: Petsc Release Version 3.2.0, Patch 4, Sun Oct 23 12:23:18 CDT 2011 [850]PETSC ERROR: See docs/changes/index.html for recent updates. [850]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [850]PETSC ERROR: See docs/index.html for manual pages. [850]PETSC ERROR: ------------------------------------------------------------------------ [850]PETSC ERROR: ./joab on a Janus-nod named node1338 by ronglian Sat Nov 26 21:44:16 2011 [850]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-3.2-p4/Janus-nodebug/lib [850]PETSC ERROR: Configure run at Tue Oct 25 19:27:52 2011 [850]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-batch=1 --with-mpi-shared=1 --known-mpi-shared-libraries=0 --with-debugging=0 --download-f-blas-lapack=1 --download-parmetis=1 --download-superlu_dist=1 --download-superlu=1 --download-scalapack=1 --download-blacs=1 --download-mumps=1 --download-hypre=1 [850]PETSC ERROR: ------------------------------------------------------------------------ [850]PETSC ERROR: User provided function() line 0 in unknown directory unknown file -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 850 in communicator MPI_COMM_WORLD with errorcode 59. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- ***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] == idxsum(nedges, cadjwgt) 0 91 89 91 0 [986]PETSC ERROR: ------------------------------------------------------------------------ [986]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [986]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [986]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[986]PETSCERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [986]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [986]PETSC ERROR: to get more information on the crash. [986]PETSC ERROR: --------------------- Error Message ------------------------------------ [986]PETSC ERROR: Signal received! [986]PETSC ERROR: ------------------------------------------------------------------------ [986]PETSC ERROR: Petsc Release Version 3.2.0, Patch 4, Sun Oct 23 12:23:18 CDT 2011 [986]PETSC ERROR: See docs/changes/index.html for recent updates. [986]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [986]PETSC ERROR: See docs/index.html for manual pages. [986]PETSC ERROR: ------------------------------------------------------------------------ [986]PETSC ERROR: ./joab on a Janus-nod named node1326 by ronglian Sat Nov 26 21:44:16 2011 [986]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-3.2-p4/Janus-nodebug/lib [986]PETSC ERROR: Configure run at Tue Oct 25 19:27:52 2011 [986]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-batch=1 --with-mpi-shared=1 --known-mpi-shared-libraries=0 --with-debugging=0 --download-f-blas-lapack=1 --download-parmetis=1 --download-superlu_dist=1 --download-superlu=1 --download-scalapack=1 --download-blacs=1 --download-mumps=1 --download-hypre=1 [986]PETSC ERROR: ------------------------------------------------------------------------ [986]PETSC ERROR: User provided function() line 0 in unknown directory unknown file ***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] == idxsum(nedges, cadjwgt) 0 91 89 91 0 [1409]PETSC ERROR: ------------------------------------------------------------------------ [1409]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [1409]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [1409]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[1409]PETSCERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [1409]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [1409]PETSC ERROR: to get more information on the crash. [1409]PETSC ERROR: --------------------- Error Message ------------------------------------ [1409]PETSC ERROR: Signal received! [1409]PETSC ERROR: ------------------------------------------------------------------------ [1409]PETSC ERROR: Petsc Release Version 3.2.0, Patch 4, Sun Oct 23 12:23:18 CDT 2011 [1409]PETSC ERROR: See docs/changes/index.html for recent updates. [1409]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [1409]PETSC ERROR: See docs/index.html for manual pages. [1409]PETSC ERROR: ------------------------------------------------------------------------ [1409]PETSC ERROR: ./joab on a Janus-nod named node1268 by ronglian Sat Nov 26 21:44:16 2011 [1409]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-3.2-p4/Janus-nodebug/lib [1409]PETSC ERROR: Configure run at Tue Oct 25 19:27:52 2011 [1409]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-batch=1 --with-mpi-shared=1 --known-mpi-shared-libraries=0 --with-debugging=0 --download-f-blas-lapack=1 --download-parmetis=1 --download-superlu_dist=1 --download-superlu=1 --download-scalapack=1 --download-blacs=1 --download-mumps=1 --download-hypre=1 [1409]PETSC ERROR: ------------------------------------------------------------------------ [1409]PETSC ERROR: User provided function() line 0 in unknown directory unknown file ***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] == idxsum(nedges, cadjwgt) 0 91 89 91 0 [1233]PETSC ERROR: ------------------------------------------------------------------------ [1233]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [1233]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [1233]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[1233]PETSCERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [1233]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [1233]PETSC ERROR: to get more information on the crash. [1233]PETSC ERROR: --------------------- Error Message ------------------------------------ [1233]PETSC ERROR: Signal received! [1233]PETSC ERROR: ------------------------------------------------------------------------ [1233]PETSC ERROR: Petsc Release Version 3.2.0, Patch 4, Sun Oct 23 12:23:18 CDT 2011 [1233]PETSC ERROR: See docs/changes/index.html for recent updates. [1233]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [1233]PETSC ERROR: See docs/index.html for manual pages. [1233]PETSC ERROR: ------------------------------------------------------------------------ [1233]PETSC ERROR: ./joab on a Janus-nod named node1304 by ronglian Sat Nov 26 21:44:16 2011 [1233]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-3.2-p4/Janus-nodebug/lib [1233]PETSC ERROR: Configure run at Tue Oct 25 19:27:52 2011 [1233]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-batch=1 --with-mpi-shared=1 --known-mpi-shared-libraries=0 --with-debugging=0 --download-f-blas-lapack=1 --download-parmetis=1 --download-superlu_dist=1 --download-superlu=1 --download-scalapack=1 --download-blacs=1 --download-mumps=1 --download-hypre=1 [1233]PETSC ERROR: ------------------------------------------------------------------------ [1233]PETSC ERROR: User provided function() line 0 in unknown directory unknown file ***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] == idxsum(nedges, cadjwgt) 0 91 89 91 0 [1026]PETSC ERROR: ------------------------------------------------------------------------ [1026]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [1026]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [1026]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[1026]PETSCERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [1026]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [1026]PETSC ERROR: to get more information on the crash. [1026]PETSC ERROR: --------------------- Error Message ------------------------------------ [1026]PETSC ERROR: Signal received! [1026]PETSC ERROR: ------------------------------------------------------------------------ [1026]PETSC ERROR: Petsc Release Version 3.2.0, Patch 4, Sun Oct 23 12:23:18 CDT 2011 [1026]PETSC ERROR: See docs/changes/index.html for recent updates. [1026]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [1026]PETSC ERROR: See docs/index.html for manual pages. [1026]PETSC ERROR: ------------------------------------------------------------------------ [1026]PETSC ERROR: ./joab on a Janus-nod named node1323 by ronglian Sat Nov 26 21:44:16 2011 [1026]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-3.2-p4/Janus-nodebug/lib [1026]PETSC ERROR: Configure run at Tue Oct 25 19:27:52 2011 [1026]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-batch=1 --with-mpi-shared=1 --known-mpi-shared-libraries=0 --with-debugging=0 --download-f-blas-lapack=1 --download-parmetis=1 --download-superlu_dist=1 --download-superlu=1 --download-scalapack=1 --download-blacs=1 --download-mumps=1 --download-hypre=1 [1026]PETSC ERROR: ------------------------------------------------------------------------ [1026]PETSC ERROR: User provided function() line 0 in unknown directory unknown file ***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] == idxsum(nedges, cadjwgt) 0 91 89 91 0 [1326]PETSC ERROR: ------------------------------------------------------------------------ [1326]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [1326]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [1326]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[1326]PETSCERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [1326]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [1326]PETSC ERROR: to get more information on the crash. [1326]PETSC ERROR: --------------------- Error Message ------------------------------------ [1326]PETSC ERROR: Signal received! [1326]PETSC ERROR: ------------------------------------------------------------------------ [1326]PETSC ERROR: Petsc Release Version 3.2.0, Patch 4, Sun Oct 23 12:23:18 CDT 2011 [1326]PETSC ERROR: See docs/changes/index.html for recent updates. [1326]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [1326]PETSC ERROR: See docs/index.html for manual pages. [1326]PETSC ERROR: ------------------------------------------------------------------------ [1326]PETSC ERROR: ./joab on a Janus-nod named node1276 by ronglian Sat Nov 26 21:44:16 2011 [1326]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-3.2-p4/Janus-nodebug/lib [1326]PETSC ERROR: Configure run at Tue Oct 25 19:27:52 2011 [1326]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-batch=1 --with-mpi-shared=1 --known-mpi-shared-libraries=0 --with-debugging=0 --download-f-blas-lapack=1 --download-parmetis=1 --download-superlu_dist=1 --download-superlu=1 --download-scalapack=1 --download-blacs=1 --download-mumps=1 --download-hypre=1 [1326]PETSC ERROR: ------------------------------------------------------------------------ [1326]PETSC ERROR: User provided function() line 0 in unknown directory unknown file ***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] == idxsum(nedges, cadjwgt) 0 91 89 91 0 -------------- next part -------------- An HTML attachment was scrubbed... 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