Send make.log to petsc-maint at mcs.anl.gov
On Oct 4, 2012, at 3:29 PM, Mark Porter <porterma at lanl.gov> wrote: > I am having trouble with the make test once petsc configure and I have run > make all. The error is as follows: > > Running test examples to verify correct installation > Using PETSC_DIR=/home/porterma/Applications/petsc-dev and > PETSC_ARCH=linux-gnu-c-debug > C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1 MPI > process > C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2 MPI > processes > --------------Error detected during compile or link!----------------------- > See http://www.mcs.anl.gov/petsc/documentation/faq.html > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials ex5f > --------------------------------------------------------------------------- > /home/porterma/Applications/petsc-dev/linux-gnu-c-debug/bin/mpif90 -c -Wall > -Wno-unused-variable -g -I/home/porterma/Applications/petsc-dev/include > -I/home/porterma/Applications/petsc-dev/linux-gnu-c-debug/include -o > ex5f.o ex5f.F > Warning: Nonconforming tab character in column 1 of line 3099 > Warning: Nonconforming tab character in column 1 of line 5574 > Warning: Nonconforming tab character in column 1 of line 7846 > Warning: Nonconforming tab character in column 1 of line 10114 > Warning: Nonconforming tab character in column 1 of line 12423 > /home/porterma/Applications/petsc-dev/linux-gnu-c-debug/bin/mpif90 -Wall > -Wno-unused-variable -g -o ex5f ex5f.o > -L/home/porterma/Applications/petsc-dev/linux-gnu-c-debug/lib -lpetsc > -lpthread > -Wl,-rpath,/home/porterma/Applications/petsc-dev/linux-gnu-c-debug/lib > -lflapack -lfblas -lhdf5_fortran -lhdf5 -lhdf5hl_fortran -lhdf5_hl -lz > -L/usr/lib/gcc/x86_64-redhat-linux6E/4.4.6 -lmpi_f90 -lmpi_f77 -lgfortran -lm > -lm -lm -lm -lm -lm -lm -lm -lmpi_cxx -lstdc++ -lmpi_cxx -lstdc++ -ldl -lmpi > -lrt -lnsl -lutil -lgcc_s -lpthread -ldl > ex5f.o: In function `MAIN__': > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:94: > undefined reference to `snescreate_' > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:112: > undefined reference to `dmcreateglobalvector_' > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:113: > undefined reference to `vecduplicate_' > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:124: > undefined reference to `dmdagetcorners_' > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:126: > undefined reference to `dmdagetghostcorners_' > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:145: > undefined reference to `snessetdm_' > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:153: > undefined reference to `snessetfromoptions_' > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:165: > undefined reference to `snesgetiterationnumber_' > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:177: > undefined reference to `vecdestroy_' > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:178: > undefined reference to `vecdestroy_' > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:179: > undefined reference to `snesdestroy_' > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:180: > undefined reference to `dmdestroy_' > ex5f.o: In function `forminitialguess_': > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:226: > undefined reference to `dmgetlocalvector_' > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:239: > undefined reference to `dmlocaltoglobalbegin_' > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:240: > undefined reference to `dmlocaltoglobalend_' > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:241: > undefined reference to `dmrestorelocalvector_' > ex5f.o: In function `formjacobianlocal_': > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:462: > undefined reference to `matsetvalueslocal_' > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:477: > undefined reference to `matsetvalueslocal_' > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:481: > undefined reference to `matassemblybegin_' > /home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:482: > undefined reference to `matassemblyend_' > collect2: ld returned 1 exit status > make[3]: [ex5f] Error 1 (ignored) > /bin/rm -f ex5f.o > Completed test examples > > > Any suggestions would be helpful. > > Thanks. > porter > > > > -- > Mark L. Porter, Ph.D. > Earth & Environmental Sciences (EES-14) > Los Alamos National Laboratory > work: 505.606.1971 > cell: 541.517.2761 > > porterma at lanl.gov
