I am trying to compile PETSc on a SLURM-based system using GCC, openmpi-1.6.3.
Here's my configure line: $ ./configure --prefix=/tmp/dog/petsc-3.3-p5 --with-mpiexec=mpiexec configure bombs out on this test: TESTING: configureMPITypes from config.packages.MPI(/usr/aprojects/hpctools/dog/petsc/petsc-3.3-p5/config/BuildSystem/config/packages/MPI.py:230)srun: error: slurm_send_recv_rc_msg_only_one: Connection timed out srun: error: slurm_send_recv_rc_msg_only_one: Connection timed out It should not be trying to srun anything as we use mpiexec with Open-MPI. Any ideas? -david -- David Gunter HPC-3: Infrastructure Team Los Alamos National Laboratory
