Perhaps mpiexec is invoking srun internally? The details should be in configure.log
[petsc configure doesn't know about srun]. Satish On Wed, 19 Dec 2012, Gunter, David O wrote: > I am trying to compile PETSc on a SLURM-based system using GCC, openmpi-1.6.3. > > Here's my configure line: > > $ ./configure --prefix=/tmp/dog/petsc-3.3-p5 --with-mpiexec=mpiexec > > configure bombs out on this test: > > TESTING: configureMPITypes from > config.packages.MPI(/usr/aprojects/hpctools/dog/petsc/petsc-3.3-p5/config/BuildSystem/config/packages/MPI.py:230)srun: > error: slurm_send_recv_rc_msg_only_one: Connection timed out > srun: error: slurm_send_recv_rc_msg_only_one: Connection timed out > > It should not be trying to srun anything as we use mpiexec with Open-MPI. > Any ideas? > > -david > > -- > David Gunter > HPC-3: Infrastructure Team > Los Alamos National Laboratory > > > > >
