> BTW: I also updated some routines in moab.cxx for changes in how we handle > setfromoptions in master
Thanks Barry, I'll take a look at it. Will be spending time next couple of weeks on DMMoab to add some geometric multigrid hooks and more examples. Vijay On Wed, Jan 28, 2015 at 9:29 PM, Barry Smith <[email protected]> wrote: > Fixed in master and next. Thanks for reporting it. > > Barry > > BTW: I also updated some routines in moab.cxx for changes in how we handle > setfromoptions in master > >> On Jan 28, 2015, at 7:39 PM, Vijay S. Mahadevan <[email protected]> wrote: >> >> With the current master, when using a prefix, configuration fails with >> the following error message. I've not attached configure.log since its >> around 7MB (but definitely can send that if that helps further >> deciphering the issue). The problem here seems to be that >> $PREFIX/include is not created (while $PREFIX/lib is created >> explicitly with mkdir -p). If I manually create $PREFIX/include and >> rerun configure, everything proceeds fine. Minor annoyance. >> >> I am not sure whether I just pulled in between merges though. My >> latest hash: c04667f413dc6e46059f28faddb2b19f70ad4cfd. >> >> Command: >> ./configure --CFLAGS="-O2 -mtune=generic" >> --CPPFLAGS=-I/usr/software/metis-5.1.0/include --CXXFLAGS="-O2 >> -mtune=generic" --FFLAGS="-O2 -mtune=generic" >> --LDFLAGS="-L/usr/software/moab/dev/optimized/lib >> -L/usr/software/pnetcdf-1.3.1/lib -L/usr/software/zoltan-3.6/lib >> -L/usr/software/ptscotch-6.0/lib -L/usr/software/parmetis-4.0.3/lib >> -L/usr/software/metis-5.1.0/lib" --LIBS="-lpnetcdf -lparmetis -lmetis >> -lm" --download-hypre=yes --download-mumps=yes >> --download-scalapack=yes --download-suitesparse=yes >> --prefix=/usr/software/petsc/dev/ubuntu_standalone_opt >> --with-blas-lapack-dir=/usr >> --with-boost-dir=/usr/software/boost/current --with-clanguage=C++ >> --with-cmake=/usr/software/cmake/bin/cmake --with-cuda=0 >> --with-debugging=0 --with-fortran-interfaces=1 >> --with-fortran-kernels=1 --with-fortran=1 >> --with-hdf5-dir=/usr/software/hdf5-1.8.11 >> --with-metis-dir=/usr/software/metis-5.1.0 >> --with-moab-include=/usr/software/moab/dev/optimized/include >> --with-moab-lib="-lMOAB -liMesh -lmbcoupler -lzoltan -lptscotch >> -lptscotcherr -lptscotcherrexit -lscotch -lscotcherr -lscotcherrexit >> -lz -lm " --with-mpi-dir=/usr/software/mpich-3.0.4 >> --with-netcdf-dir=/usr/software/netcdf-4.3.0 --with-openmp=0 >> --with-parmetis-dir=/usr/software/parmetis-4.0.3 --with-pic=1 >> --with-ptscotch-include=/usr/software/ptscotch-6.0/include >> --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr >> -lptscotcherrexit -lscotch -lscotcherr -lscotcherrexit -lz -lm" >> --with-shared-libraries=1 PETSC_ARCH=ubuntu_standalone_opt >> >> Error: >> ******************************************************************************* >> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log >> for details): >> ------------------------------------------------------------------------------- >> Error running make on MUMPS: Could not execute "mkdir -p >> /usr/software/petsc/dev/ubuntu_standalone_opt/lib && cd >> /home/vijaysm/code/petsc/ubuntu_standalone_opt/externalpackages/MUMPS >> && cp -f lib/*.* /usr/software/petsc/dev/ubuntu_standalone_opt/lib/. >> && cp -f include/*.* >> /usr/software/petsc/dev/ubuntu_standalone_opt/include/.": >> cp: target '/usr/software/petsc/dev/ubuntu_standalone_opt/include/.' >> is not a directory >> ******************************************************************************* >> >> Vijay >
