On Thu, Mar 26, 2015 at 4:21 PM, Matthew Knepley <[email protected]> wrote:
> On Thu, Mar 26, 2015 at 1:48 PM, David Knezevic < > [email protected]> wrote: > >> Hi all, >> >> I'm trying to configure PETSc using Intel's MKL and with --download-ml. >> Here is my configure line: >> >> ./configure >> --with-blas-lapack-dir=/opt/intel/composer_xe_2015/mkl/lib/intel64 >> --download-ml >> >> I get an error when ML does "checking for dgemm". The configure.log is >> attached. I was wondering if anyone has any suggestions about how I can get >> this to work? >> > > We will need $PETSC_ARCH/externalpackages/ml-*/config.log to see where > their test failed. > I've attached this file. > However, MKL is almost never worth it. > > OK, interesting, why not? The reason I'm using MKL in this case is because I found that the direct solvers MUMPS and SuperLU were surprising slow on a Haswell server. After rebuilding PETSc with MKL, these solvers were more than 3x faster in some cases. David
This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by ml configure 6.2, which was generated by GNU Autoconf 2.61. Invocation command line was $ ./configure --prefix=/home/akselos/software/petsc-3.5.3/arch-linux2-c-debug --libdir=/home/akselos/software/petsc-3.5.3/arch-linux2-c-debug/lib --disable-ml-epetra --disable-ml-aztecoo --disable-ml-examples --disable-tests CC=mpicc --with-cflags= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi CPPFLAGS=-I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi F77=mpif90 --with-fflags= -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi CXX=mpicxx --with-cxxflags= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi --enable-mpi --with-mpi-libs= --with-blas=-Wl,-rpath,/opt/intel/composer_xe_2015/mkl/lib/intel64 -L/opt/intel/composer_xe_2015/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpi_f90 -lmpi_f77 -lgfortran -lm -Wl,-rpath,/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm ## --------- ## ## Platform. ## ## --------- ## hostname = build-scrbe uname -m = x86_64 uname -r = 3.16.0-31-generic uname -s = Linux uname -v = #43~14.04.1-Ubuntu SMP Tue Mar 10 20:13:38 UTC 2015 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games PATH: /usr/local/games ## ----------- ## ## Core tests. ## ## ----------- ## configure:2160: checking whether to enable maintainer-specific portions of Makefiles configure:2169: result: no configure:2191: checking build system type configure:2209: result: x86_64-unknown-linux-gnu configure:2231: checking host system type configure:2246: result: x86_64-unknown-linux-gnu configure:2268: checking target system type configure:2283: result: x86_64-unknown-linux-gnu configure:2329: checking for a BSD-compatible install configure:2385: result: /usr/bin/install -c configure:2396: checking whether build environment is sane configure:2439: result: yes configure:2467: checking for a thread-safe mkdir -p configure:2506: result: /bin/mkdir -p configure:2519: checking for gawk configure:2535: found /usr/bin/gawk configure:2546: result: gawk configure:2557: checking whether make sets $(MAKE) configure:2578: result: yes configure:2752: checking how to create a ustar tar archive configure:2765: tar --version tar (GNU tar) 1.27.1 Copyright (C) 2013 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>. This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Written by John Gilmore and Jay Fenlason. configure:2768: $? = 0 configure:2808: tardir=conftest.dir && eval tar --format=ustar -chf - "$tardir" >conftest.tar configure:2811: $? = 0 configure:2815: tar -xf - <conftest.tar configure:2818: $? = 0 configure:2831: result: gnutar configure:2993: checking user-defined MPI libraries configure:2995: result: configure:3030: checking whether we are using MPI configure:3032: result: yes configure:3349: checking for C++ compiler version configure:3356: mpicxx --version >&5 g++ (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3359: $? = 0 configure:3366: mpicxx -v >&5 Using built-in specs. COLLECT_GCC=/usr/bin/g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.2-19ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1) configure:3369: $? = 0 configure:3376: mpicxx -V >&5 g++: error: unrecognized command line option '-V' g++: fatal error: no input files compilation terminated. configure:3379: $? = 4 configure:3402: checking for C++ compiler default output file name configure:3429: mpicxx -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:3432: $? = 0 configure:3470: result: a.out configure:3487: checking whether the C++ compiler works configure:3497: ./a.out configure:3500: $? = 0 configure:3517: result: yes configure:3524: checking whether we are cross compiling configure:3526: result: no configure:3529: checking for suffix of executables configure:3536: mpicxx -o conftest -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:3539: $? = 0 configure:3563: result: configure:3569: checking for suffix of object files configure:3595: mpicxx -c -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:3598: $? = 0 configure:3621: result: o configure:3625: checking whether we are using the GNU C++ compiler configure:3654: mpicxx -c -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:3660: $? = 0 configure:3677: result: yes configure:3682: checking whether mpicxx accepts -g configure:3712: mpicxx -c -g -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:3718: $? = 0 configure:3817: result: yes configure:3851: checking for style of include used by make configure:3879: result: GNU configure:3904: checking dependency style of mpicxx configure:3995: result: gcc3 configure:4154: checking for C compiler version configure:4161: mpicc --version >&5 gcc (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4164: $? = 0 configure:4171: mpicc -v >&5 Using built-in specs. COLLECT_GCC=/usr/bin/gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.2-19ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1) configure:4174: $? = 0 configure:4181: mpicc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:4184: $? = 4 configure:4187: checking whether we are using the GNU C compiler configure:4216: mpicc -c -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.c >&5 configure:4222: $? = 0 configure:4239: result: yes configure:4244: checking whether mpicc accepts -g configure:4274: mpicc -c -g -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.c >&5 configure:4280: $? = 0 configure:4379: result: yes configure:4396: checking for mpicc option to accept ISO C89 configure:4470: mpicc -c -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.c >&5 configure:4476: $? = 0 configure:4499: result: none needed configure:4519: checking dependency style of mpicc configure:4610: result: gcc3 configure:4735: checking for Fortran 77 compiler version configure:4742: mpif90 --version >&5 GNU Fortran (Ubuntu 4.8.2-19ubuntu1) 4.8.2 Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:4745: $? = 0 configure:4752: mpif90 -v >&5 Using built-in specs. COLLECT_GCC=/usr/bin/gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.2-19ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1) configure:4755: $? = 0 configure:4762: mpif90 -V >&5 gfortran: error: unrecognized command line option '-V' gfortran: fatal error: no input files compilation terminated. configure:4765: $? = 4 configure:4773: checking whether we are using the GNU Fortran 77 compiler configure:4792: mpif90 -c conftest.F >&5 configure:4798: $? = 0 configure:4815: result: yes configure:4821: checking whether mpif90 accepts -g configure:4838: mpif90 -c -g conftest.f >&5 configure:4844: $? = 0 configure:4860: result: yes configure:4928: checking for ranlib configure:4944: found /usr/bin/ranlib configure:4955: result: ranlib configure:4989: checking finding build directory configure:4992: result: /home/akselos/software/petsc-3.5.3/arch-linux2-c-debug/externalpackages/ml configure:5015: checking whether additional CCFLAGS flags should be added configure:5026: result: no configure:5033: checking whether additional CXXFLAGS flags should be added configure:5040: result: CXXFLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 configure:5071: checking whether additional CFLAGS flags should be added configure:5078: result: CFLAGS = -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 configure:5089: checking whether additional FFLAGS flags should be added configure:5096: result: FFLAGS = -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 configure:5107: checking whether additional libraries are needed configure:5118: result: no configure:5126: checking whether additional LDFLAGS flags should be added configure:5137: result: no configure:5170: checking for special archiver command configure:5184: result: none configure:5207: checking how to run the C++ preprocessor configure:5243: mpicxx -E -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp configure:5249: $? = 0 configure:5280: mpicxx -E -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp conftest.cpp:9:28: fatal error: ac_nonexistent.h: No such file or directory #include <ac_nonexistent.h> ^ compilation terminated. configure:5286: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ml" | #define PACKAGE_TARNAME "ml" | #define PACKAGE_VERSION "6.2" | #define PACKAGE_STRING "ml 6.2" | #define PACKAGE_BUGREPORT "[email protected]" | #define HAVE_MPI | /* end confdefs.h. */ | #include <ac_nonexistent.h> configure:5319: result: mpicxx -E configure:5348: mpicxx -E -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp configure:5354: $? = 0 configure:5385: mpicxx -E -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp conftest.cpp:9:28: fatal error: ac_nonexistent.h: No such file or directory #include <ac_nonexistent.h> ^ compilation terminated. configure:5391: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ml" | #define PACKAGE_TARNAME "ml" | #define PACKAGE_VERSION "6.2" | #define PACKAGE_STRING "ml 6.2" | #define PACKAGE_BUGREPORT "[email protected]" | #define HAVE_MPI | /* end confdefs.h. */ | #include <ac_nonexistent.h> configure:5447: checking for mpi.h configure:5462: mpicxx -E -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp configure:5468: $? = 0 configure:5473: result: yes configure:5542: checking whether to build export makefiles configure:5547: result: yes configure:5623: checking for perl configure:5639: found /usr/bin/perl configure:5651: result: yes configure:5695: checking whether gnumake specific code should be enabled configure:5707: result: no configure:5738: checking for grep that handles long lines and -e configure:5812: result: /bin/grep configure:5817: checking for egrep configure:5895: result: /bin/grep -E configure:5900: checking for ANSI C header files configure:5930: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:5936: $? = 0 configure:6035: mpicxx -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:6038: $? = 0 configure:6044: ./conftest configure:6047: $? = 0 configure:6064: result: yes configure:6088: checking for sys/types.h configure:6109: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:6115: $? = 0 configure:6131: result: yes configure:6088: checking for sys/stat.h configure:6109: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:6115: $? = 0 configure:6131: result: yes configure:6088: checking for stdlib.h configure:6109: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:6115: $? = 0 configure:6131: result: yes configure:6088: checking for string.h configure:6109: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:6115: $? = 0 configure:6131: result: yes configure:6088: checking for memory.h configure:6109: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:6115: $? = 0 configure:6131: result: yes configure:6088: checking for strings.h configure:6109: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:6115: $? = 0 configure:6131: result: yes configure:6088: checking for inttypes.h configure:6109: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:6115: $? = 0 configure:6131: result: yes configure:6088: checking for stdint.h configure:6109: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:6115: $? = 0 configure:6131: result: yes configure:6088: checking for unistd.h configure:6109: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:6115: $? = 0 configure:6131: result: yes configure:6159: checking cstdlib usability configure:6176: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:6182: $? = 0 configure:6196: result: yes configure:6200: checking cstdlib presence configure:6215: mpicxx -E -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp configure:6221: $? = 0 configure:6235: result: yes configure:6268: checking for cstdlib configure:6276: result: yes configure:6305: checking cstdio usability configure:6322: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:6328: $? = 0 configure:6342: result: yes configure:6346: checking cstdio presence configure:6361: mpicxx -E -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp configure:6367: $? = 0 configure:6381: result: yes configure:6414: checking for cstdio configure:6422: result: yes configure:6451: checking cassert usability configure:6468: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:6474: $? = 0 configure:6488: result: yes configure:6492: checking cassert presence configure:6507: mpicxx -E -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp configure:6513: $? = 0 configure:6527: result: yes configure:6560: checking for cassert configure:6568: result: yes configure:6597: checking cmath usability configure:6614: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:6620: $? = 0 configure:6634: result: yes configure:6638: checking cmath presence configure:6653: mpicxx -E -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp configure:6659: $? = 0 configure:6673: result: yes configure:6706: checking for cmath configure:6714: result: yes configure:6743: checking iomanip usability configure:6760: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:6766: $? = 0 configure:6780: result: yes configure:6784: checking iomanip presence configure:6799: mpicxx -E -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp configure:6805: $? = 0 configure:6819: result: yes configure:6852: checking for iomanip configure:6860: result: yes configure:6889: checking iostream usability configure:6906: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:6912: $? = 0 configure:6926: result: yes configure:6930: checking iostream presence configure:6945: mpicxx -E -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp configure:6951: $? = 0 configure:6965: result: yes configure:6998: checking for iostream configure:7006: result: yes configure:7035: checking string usability configure:7052: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:7058: $? = 0 configure:7072: result: yes configure:7076: checking string presence configure:7091: mpicxx -E -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp configure:7097: $? = 0 configure:7111: result: yes configure:7144: checking for string configure:7152: result: yes configure:7180: checking malloc.h usability configure:7197: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:7203: $? = 0 configure:7217: result: yes configure:7221: checking malloc.h presence configure:7236: mpicxx -E -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp configure:7242: $? = 0 configure:7256: result: yes configure:7289: checking for malloc.h configure:7297: result: yes configure:7598: checking for inline configure:7624: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:7630: $? = 0 configure:7648: result: inline configure:7672: checking whether the compiler implements namespaces configure:7705: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:7711: $? = 0 configure:7733: result: yes configure:7743: checking whether the compiler supports Standard Template Library configure:7782: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:7788: $? = 0 configure:7810: result: yes configure:7820: checking whether the compiler recognizes bool as a built-in type configure:7857: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:7863: $? = 0 configure:7885: result: yes configure:7895: checking whether the compiler supports the mutable keyword configure:7933: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:7939: $? = 0 configure:7961: result: yes configure:7974: checking whether the compiler accepts the new for scoping rules configure:8013: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:8019: $? = 0 configure:8041: result: yes configure:8052: checking whether the compiler recognizes std::sprintf as supported IO function configure:8092: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:8098: $? = 0 configure:8141: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:43:6: error: 'sprintf' is not a member of 'std' std::sprintf(s, "%d", x); ^ conftest.cpp:43:6: note: suggested alternative: In file included from /usr/include/features.h:374:0, from /usr/include/stdio.h:27, from conftest.cpp:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:31:1: note: 'sprintf' __NTH (sprintf (char *__restrict __s, const char *__restrict __fmt, ...)) ^ configure:8147: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ml" | #define PACKAGE_TARNAME "ml" | #define PACKAGE_VERSION "6.2" | #define PACKAGE_STRING "ml 6.2" | #define PACKAGE_BUGREPORT "[email protected]" | #define HAVE_MPI | #define HAVE_EXPORT_MAKEFILES | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_CSTDLIB 1 | #define HAVE_CSTDIO 1 | #define HAVE_CASSERT 1 | #define HAVE_CMATH 1 | #define HAVE_IOMANIP 1 | #define HAVE_IOSTREAM 1 | #define HAVE_STRING 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NAMESPACES | #define HAVE_STL | #define HAVE_BOOL | #define HAVE_MUTABLE | #define HAVE_NEW_FOR_SCOPING | /* end confdefs.h. */ | | #include <stdio.h> | #include <string> | | int | main () | { | | int x = 100; | char s[100]; | std::sprintf(s, "%d", x); | | ; | return 0; | } configure:8175: result: yes configure:8186: checking whether mpicc recognizes __PRETTY_FUNCTION__ configure:8209: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:38:13: warning: unused variable 's' [-Wunused-variable] const char *s = __PRETTY_FUNCTION__; ^ configure:8215: $? = 0 configure:8243: result: yes configure:8321: checking whether to use ml_newtpe configure:8325: result: yes configure:8350: checking whether to use ml_enrich configure:8362: result: no configure:8377: checking whether to use ml_aztec2_1 configure:8389: result: no configure:8403: checking whether to use ml_complex_maxwell configure:8415: result: no configure:8430: checking whether to use ml_timing configure:8442: result: no configure:8456: checking whether to use ml_memory_checking configure:8468: result: no configure:8482: checking whether to use ml_flops configure:8494: result: no configure:8508: checking whether to use ml_benchmarking configure:8520: result: no configure:8570: checking whether to use ml_superlu configure:8582: result: no configure:8597: checking whether to use ml_superlu2 configure:8609: result: no configure:8624: checking whether to use ml_superlu_dist configure:8636: result: no configure:8651: checking whether to use ml_metis configure:8663: result: no configure:8678: checking whether to use ml_parmetis2x configure:8690: result: no configure:8705: checking whether to use ml_parmetis3x configure:8717: result: no configure:8732: checking whether to use ml_arpack configure:8744: result: no configure:8759: checking whether to use ml_parpack configure:8771: result: no configure:8786: checking whether to use ml_parasails configure:8798: result: no configure:8813: checking whether to use ml_nox configure:8825: result: no configure:8848: checking whether to use ml_zoltan configure:8860: result: no configure:8883: checking whether to use ml_zoltan3 configure:8895: result: no configure:8920: checking whether to use petsc configure:8932: result: no configure:8966: checking whether to build optional epetra dependent code in ml configure:8978: result: no configure:9017: checking whether to build optional amesos dependent code in ml configure:9029: result: no configure:9080: checking whether to build optional ifpack dependent code in ml configure:9092: result: no configure:9131: checking whether to build optional teuchos dependent code in ml configure:9143: result: no configure:9184: checking whether to build optional aztecoo dependent code in ml configure:9196: result: no configure:9235: checking whether to build optional epetraext dependent code in ml configure:9247: result: no configure:9295: checking whether to build optional isorropia dependent code in ml configure:9307: result: no configure:9346: checking whether to build optional galeri dependent code in ml configure:9358: result: no configure:9415: checking whether to use ml-examples configure:9427: result: no configure:9451: checking whether to use tests configure:9463: result: no configure:9484: checking whether to use ml-tests configure:9496: result: no configure:9540: checking whether to use libcheck configure:9544: result: yes configure:9563: checking whether additional library search paths defined configure:9574: result: no configure:9582: checking whether additional include search paths defined configure:9593: result: no configure:9609: checking how to get verbose linking output from mpif90 configure:9625: mpif90 -c -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 conftest.f >&5 configure:9631: $? = 0 configure:9653: mpif90 -o conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -v conftest.f Using built-in specs. COLLECT_GCC=/usr/bin/gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.2-19ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1) COLLECT_GCC_OPTIONS='-o' 'conftest' '-fPIC' '-Wall' '-Wno-unused-variable' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/openmpi/include' '-I' '/usr/lib/openmpi/include/openmpi' '-g' '-O2' '-v' '-I' '/usr/lib/openmpi/include' '-pthread' '-I' '/usr/lib/openmpi/lib' '-L/usr//lib' '-L/usr/lib/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.8/f951 conftest.f -ffixed-form -I /usr/lib/openmpi/include -I /usr/lib/openmpi/include/openmpi -I /usr/lib/openmpi/include -I /usr/lib/openmpi/lib -quiet -dumpbase conftest.f -mtune=generic -march=x86-64 -auxbase conftest -g -g -O0 -O2 -Wall -Wno-unused-variable -Wno-unused-dummy-argument -version -fPIC -ffree-line-length-0 -fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/4.8/finclude -o /tmp/cc83n9pK.s GNU Fortran (Ubuntu 4.8.2-19ubuntu1) version 4.8.2 (x86_64-linux-gnu) compiled by GNU C version 4.8.2, GMP version 5.1.3, MPFR version 3.1.2-p3, MPC version 1.0.1 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU Fortran (Ubuntu 4.8.2-19ubuntu1) version 4.8.2 (x86_64-linux-gnu) compiled by GNU C version 4.8.2, GMP version 5.1.3, MPFR version 3.1.2-p3, MPC version 1.0.1 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 COLLECT_GCC_OPTIONS='-o' 'conftest' '-fPIC' '-Wall' '-Wno-unused-variable' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/openmpi/include' '-I' '/usr/lib/openmpi/include/openmpi' '-g' '-O2' '-v' '-I' '/usr/lib/openmpi/include' '-pthread' '-I' '/usr/lib/openmpi/lib' '-L/usr//lib' '-L/usr/lib/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' as -v -I /usr/lib/openmpi/include -I /usr/lib/openmpi/include/openmpi -I /usr/lib/openmpi/include -I /usr/lib/openmpi/lib --64 -o /tmp/cc4auAmh.o /tmp/cc83n9pK.s GNU assembler version 2.24 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.24 Reading specs from /usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-o' 'conftest' '-fPIC' '-Wall' '-Wno-unused-variable' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/openmpi/include' '-I' '/usr/lib/openmpi/include/openmpi' '-g' '-O2' '-v' '-I' '/usr/lib/openmpi/include' '-pthread' '-I' '/usr/lib/openmpi/lib' '-L/usr//lib' '-L/usr/lib/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' 'conftest' '-fPIC' '-Wall' '-Wno-unused-variable' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/openmpi/include' '-I' '/usr/lib/openmpi/include/openmpi' '-g' '-O2' '-v' '-I' '/usr/lib/openmpi/include' '-pthread' '-I' '/usr/lib/openmpi/lib' '-L/usr//lib' '-L/usr/lib/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o conftest /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o -L/usr//lib -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. /tmp/cc4auAmh.o -lmpi_f90 -lmpi_f77 -lmpi -ldl -lhwloc -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lpthread -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o configure:9719: result: -v configure:9721: checking for Fortran 77 libraries of mpif90 configure:9744: mpif90 -o conftest -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -v conftest.f Using built-in specs. COLLECT_GCC=/usr/bin/gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.2-19ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1) COLLECT_GCC_OPTIONS='-o' 'conftest' '-fPIC' '-Wall' '-Wno-unused-variable' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/openmpi/include' '-I' '/usr/lib/openmpi/include/openmpi' '-g' '-O2' '-v' '-I' '/usr/lib/openmpi/include' '-pthread' '-I' '/usr/lib/openmpi/lib' '-L/usr//lib' '-L/usr/lib/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.8/f951 conftest.f -ffixed-form -I /usr/lib/openmpi/include -I /usr/lib/openmpi/include/openmpi -I /usr/lib/openmpi/include -I /usr/lib/openmpi/lib -quiet -dumpbase conftest.f -mtune=generic -march=x86-64 -auxbase conftest -g -g -O0 -O2 -Wall -Wno-unused-variable -Wno-unused-dummy-argument -version -fPIC -ffree-line-length-0 -fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/4.8/finclude -o /tmp/ccBwgriQ.s GNU Fortran (Ubuntu 4.8.2-19ubuntu1) version 4.8.2 (x86_64-linux-gnu) compiled by GNU C version 4.8.2, GMP version 5.1.3, MPFR version 3.1.2-p3, MPC version 1.0.1 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU Fortran (Ubuntu 4.8.2-19ubuntu1) version 4.8.2 (x86_64-linux-gnu) compiled by GNU C version 4.8.2, GMP version 5.1.3, MPFR version 3.1.2-p3, MPC version 1.0.1 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 COLLECT_GCC_OPTIONS='-o' 'conftest' '-fPIC' '-Wall' '-Wno-unused-variable' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/openmpi/include' '-I' '/usr/lib/openmpi/include/openmpi' '-g' '-O2' '-v' '-I' '/usr/lib/openmpi/include' '-pthread' '-I' '/usr/lib/openmpi/lib' '-L/usr//lib' '-L/usr/lib/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' as -v -I /usr/lib/openmpi/include -I /usr/lib/openmpi/include/openmpi -I /usr/lib/openmpi/include -I /usr/lib/openmpi/lib --64 -o /tmp/ccjEnDmn.o /tmp/ccBwgriQ.s GNU assembler version 2.24 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.24 Reading specs from /usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-o' 'conftest' '-fPIC' '-Wall' '-Wno-unused-variable' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/openmpi/include' '-I' '/usr/lib/openmpi/include/openmpi' '-g' '-O2' '-v' '-I' '/usr/lib/openmpi/include' '-pthread' '-I' '/usr/lib/openmpi/lib' '-L/usr//lib' '-L/usr/lib/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' 'conftest' '-fPIC' '-Wall' '-Wno-unused-variable' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/openmpi/include' '-I' '/usr/lib/openmpi/include/openmpi' '-g' '-O2' '-v' '-I' '/usr/lib/openmpi/include' '-pthread' '-I' '/usr/lib/openmpi/lib' '-L/usr//lib' '-L/usr/lib/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o conftest /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o -L/usr//lib -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. /tmp/ccjEnDmn.o -lmpi_f90 -lmpi_f77 -lmpi -ldl -lhwloc -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lpthread -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o configure:9918: result: -L/usr//lib -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpi_f90 -lmpi_f77 -lmpi -ldl -lhwloc -lgfortran -lm -lquadmath -lpthread configure:9935: checking for dummy main to link with Fortran 77 libraries configure:9979: mpicc -o conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.c -L/usr//lib -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpi_f90 -lmpi_f77 -lmpi -ldl -lhwloc -lgfortran -lm -lquadmath -lpthread >&5 configure:9985: $? = 0 configure:10066: result: none configure:10103: checking for Fortran 77 name-mangling scheme configure:10122: mpif90 -c -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 conftest.f >&5 configure:10128: $? = 0 configure:10183: mpicc -o conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.c cfortran_test.o -L/usr//lib -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpi_f90 -lmpi_f77 -lmpi -ldl -lhwloc -lgfortran -lm -lquadmath -lpthread >&5 /tmp/ccqY1Tzx.o: In function `main': /home/akselos/software/petsc-3.5.3/arch-linux2-c-debug/externalpackages/ml/conftest.c:57: undefined reference to `foobar' collect2: error: ld returned 1 exit status configure:10189: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ml" | #define PACKAGE_TARNAME "ml" | #define PACKAGE_VERSION "6.2" | #define PACKAGE_STRING "ml 6.2" | #define PACKAGE_BUGREPORT "[email protected]" | #define HAVE_MPI | #define HAVE_EXPORT_MAKEFILES | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_CSTDLIB 1 | #define HAVE_CSTDIO 1 | #define HAVE_CASSERT 1 | #define HAVE_CMATH 1 | #define HAVE_IOMANIP 1 | #define HAVE_IOSTREAM 1 | #define HAVE_STRING 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NAMESPACES | #define HAVE_STL | #define HAVE_BOOL | #define HAVE_MUTABLE | #define HAVE_NEW_FOR_SCOPING | #define HAVE_STD_SPRINTF | #define HAVE_CFUNC | #define HAVE_ML_NEW_T_PE 1 | #define ML_BIG_INT int | #define HAVE_LIBCHECK | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char foobar (); | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | return foobar (); | ; | return 0; | } configure:10183: mpicc -o conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.c cfortran_test.o -L/usr//lib -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpi_f90 -lmpi_f77 -lmpi -ldl -lhwloc -lgfortran -lm -lquadmath -lpthread >&5 configure:10189: $? = 0 configure:10268: mpicc -o conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.c cfortran_test.o -L/usr//lib -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpi_f90 -lmpi_f77 -lmpi -ldl -lhwloc -lgfortran -lm -lquadmath -lpthread >&5 configure:10274: $? = 0 configure:10331: result: lower case, underscore, no extra underscore configure:10445: checking for library containing pow configure:10494: mpicxx -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:10500: $? = 0 configure:10528: result: none required configure:10540: checking for library containing sqrt configure:10589: mpicxx -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp >&5 configure:10595: $? = 0 configure:10623: result: none required configure:10663: checking for dgemm_ in -Wl,-rpath,/opt/intel/composer_xe_2015/mkl/lib/intel64 -L/opt/intel/composer_xe_2015/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpi_f90 -lmpi_f77 -lgfortran -lm -Wl,-rpath,/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm configure:10701: mpicxx -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp -Wl,-rpath,/opt/intel/composer_xe_2015/mkl/lib/intel64 -L/opt/intel/composer_xe_2015/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpi_f90 -lmpi_f77 -lgfortran -lm -Wl,-rpath,/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -L/usr//lib -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpi_f90 -lmpi_f77 -lmpi -ldl -lhwloc -lgfortran -lm -lquadmath -lpthread >&5 /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `logf' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `atan2' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `sin' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `fabs' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `exp' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `cos' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `sqrt' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_intel_lp64.so: undefined reference to `log' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `pow' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `log10' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `ceil' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `expf' collect2: error: ld returned 1 exit status configure:10707: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ml" | #define PACKAGE_TARNAME "ml" | #define PACKAGE_VERSION "6.2" | #define PACKAGE_STRING "ml 6.2" | #define PACKAGE_BUGREPORT "[email protected]" | #define HAVE_MPI | #define HAVE_EXPORT_MAKEFILES | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_CSTDLIB 1 | #define HAVE_CSTDIO 1 | #define HAVE_CASSERT 1 | #define HAVE_CMATH 1 | #define HAVE_IOMANIP 1 | #define HAVE_IOSTREAM 1 | #define HAVE_STRING 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NAMESPACES | #define HAVE_STL | #define HAVE_BOOL | #define HAVE_MUTABLE | #define HAVE_NEW_FOR_SCOPING | #define HAVE_STD_SPRINTF | #define HAVE_CFUNC | #define HAVE_ML_NEW_T_PE 1 | #define ML_BIG_INT int | #define HAVE_LIBCHECK | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dgemm_ (); | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | return dgemm_ (); | ; | return 0; | } configure:10723: result: no configure:10745: checking for dgemm in -Wl,-rpath,/opt/intel/composer_xe_2015/mkl/lib/intel64 -L/opt/intel/composer_xe_2015/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpi_f90 -lmpi_f77 -lgfortran -lm -Wl,-rpath,/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm configure:10783: mpicxx -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp -Wl,-rpath,/opt/intel/composer_xe_2015/mkl/lib/intel64 -L/opt/intel/composer_xe_2015/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpi_f90 -lmpi_f77 -lgfortran -lm -Wl,-rpath,/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -L/usr//lib -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpi_f90 -lmpi_f77 -lmpi -ldl -lhwloc -lgfortran -lm -lquadmath -lpthread >&5 /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `logf' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `atan2' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `sin' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `fabs' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `exp' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `cos' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `sqrt' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_intel_lp64.so: undefined reference to `log' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `pow' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `log10' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `ceil' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `expf' collect2: error: ld returned 1 exit status configure:10789: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ml" | #define PACKAGE_TARNAME "ml" | #define PACKAGE_VERSION "6.2" | #define PACKAGE_STRING "ml 6.2" | #define PACKAGE_BUGREPORT "[email protected]" | #define HAVE_MPI | #define HAVE_EXPORT_MAKEFILES | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_CSTDLIB 1 | #define HAVE_CSTDIO 1 | #define HAVE_CASSERT 1 | #define HAVE_CMATH 1 | #define HAVE_IOMANIP 1 | #define HAVE_IOSTREAM 1 | #define HAVE_STRING 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NAMESPACES | #define HAVE_STL | #define HAVE_BOOL | #define HAVE_MUTABLE | #define HAVE_NEW_FOR_SCOPING | #define HAVE_STD_SPRINTF | #define HAVE_CFUNC | #define HAVE_ML_NEW_T_PE 1 | #define ML_BIG_INT int | #define HAVE_LIBCHECK | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dgemm (); | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | return dgemm (); | ; | return 0; | } configure:10805: result: no configure:10827: checking for DGEMM in -Wl,-rpath,/opt/intel/composer_xe_2015/mkl/lib/intel64 -L/opt/intel/composer_xe_2015/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpi_f90 -lmpi_f77 -lgfortran -lm -Wl,-rpath,/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm configure:10865: mpicxx -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp -Wl,-rpath,/opt/intel/composer_xe_2015/mkl/lib/intel64 -L/opt/intel/composer_xe_2015/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpi_f90 -lmpi_f77 -lgfortran -lm -Wl,-rpath,/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -L/usr//lib -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpi_f90 -lmpi_f77 -lmpi -ldl -lhwloc -lgfortran -lm -lquadmath -lpthread >&5 /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `logf' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `atan2' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `sin' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `fabs' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `exp' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `cos' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `sqrt' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_intel_lp64.so: undefined reference to `log' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `pow' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `log10' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `ceil' /opt/intel/composer_xe_2015/mkl/lib/intel64/libmkl_core.so: undefined reference to `expf' collect2: error: ld returned 1 exit status configure:10871: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ml" | #define PACKAGE_TARNAME "ml" | #define PACKAGE_VERSION "6.2" | #define PACKAGE_STRING "ml 6.2" | #define PACKAGE_BUGREPORT "[email protected]" | #define HAVE_MPI | #define HAVE_EXPORT_MAKEFILES | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_CSTDLIB 1 | #define HAVE_CSTDIO 1 | #define HAVE_CASSERT 1 | #define HAVE_CMATH 1 | #define HAVE_IOMANIP 1 | #define HAVE_IOSTREAM 1 | #define HAVE_STRING 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NAMESPACES | #define HAVE_STL | #define HAVE_BOOL | #define HAVE_MUTABLE | #define HAVE_NEW_FOR_SCOPING | #define HAVE_STD_SPRINTF | #define HAVE_CFUNC | #define HAVE_ML_NEW_T_PE 1 | #define ML_BIG_INT int | #define HAVE_LIBCHECK | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char DGEMM (); | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | return DGEMM (); | ; | return 0; | } configure:10887: result: no configure:10909: checking for DGEMM_ in -Wl,-rpath,/opt/intel/composer_xe_2015/mkl/lib/intel64 -L/opt/intel/composer_xe_2015/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpi_f90 -lmpi_f77 -lgfortran -lm -Wl,-rpath,/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm configure:10947: mpicxx -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi conftest.cpp -Wl,-rpath,/opt/intel/composer_xe_2015/mkl/lib/intel64 -L/opt/intel/composer_xe_2015/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpi_f90 -lmpi_f77 -lgfortran -lm -Wl,-rpath,/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -L/usr//lib -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpi_f90 -lmpi_f77 -lmpi -ldl -lhwloc -lgfortran -lm -lquadmath -lpthread >&5 /tmp/ccyGLCqj.o: In function `main': /home/akselos/software/petsc-3.5.3/arch-linux2-c-debug/externalpackages/ml/conftest.cpp:59: undefined reference to `DGEMM_' collect2: error: ld returned 1 exit status configure:10953: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ml" | #define PACKAGE_TARNAME "ml" | #define PACKAGE_VERSION "6.2" | #define PACKAGE_STRING "ml 6.2" | #define PACKAGE_BUGREPORT "[email protected]" | #define HAVE_MPI | #define HAVE_EXPORT_MAKEFILES | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_CSTDLIB 1 | #define HAVE_CSTDIO 1 | #define HAVE_CASSERT 1 | #define HAVE_CMATH 1 | #define HAVE_IOMANIP 1 | #define HAVE_IOSTREAM 1 | #define HAVE_STRING 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NAMESPACES | #define HAVE_STL | #define HAVE_BOOL | #define HAVE_MUTABLE | #define HAVE_NEW_FOR_SCOPING | #define HAVE_STD_SPRINTF | #define HAVE_CFUNC | #define HAVE_ML_NEW_T_PE 1 | #define ML_BIG_INT int | #define HAVE_LIBCHECK | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char DGEMM_ (); | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | return DGEMM_ (); | ; | return 0; | } configure:10969: result: no configure:16597: error: Cannot find blas library, specify a path using --with-ldflags=-I<DIR> (ex. --with-ldflags=-I/usr/path/lib) or a specific library using --with-blas=DIR/LIB (for example --with-blas=/usr/path/lib/libcxml.a) ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_inline=inline ac_cv_c_var_func=yes ac_cv_cxx_bool=yes ac_cv_cxx_compiler_gnu=yes ac_cv_cxx_have_stl=yes ac_cv_cxx_mutable=yes ac_cv_cxx_namespaces=yes ac_cv_cxx_new_for_scoping=yes ac_cv_cxx_std_sprintf1=yes ac_cv_cxx_std_sprintf2=no ac_cv_cxx_std_sprintf=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set=set ac_cv_env_CC_value=mpicc ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi' ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set=set ac_cv_env_CXX_value=mpicxx ac_cv_env_F77_set=set ac_cv_env_F77_value=mpif90 ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_MATLAB_EXE_set= ac_cv_env_MATLAB_EXE_value= ac_cv_env_MATLAB_set= ac_cv_env_MATLAB_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=yes ac_cv_f77_dummy_main=none ac_cv_f77_libs=' -L/usr//lib -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpi_f90 -lmpi_f77 -lmpi -ldl -lhwloc -lgfortran -lm -lquadmath -lpthread' ac_cv_f77_mangling='lower case, underscore, no extra underscore' ac_cv_fortran_dummy_main=none ac_cv_header_cassert=yes ac_cv_header_cmath=yes ac_cv_header_cstdio=yes ac_cv_header_cstdlib=yes ac_cv_header_inttypes_h=yes ac_cv_header_iomanip=yes ac_cv_header_iostream=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_implicit_use_amesos=no ac_cv_implicit_use_aztecoo=no ac_cv_implicit_use_epetra=no ac_cv_implicit_use_epetraext=no ac_cv_implicit_use_galeri=no ac_cv_implicit_use_ifpack=no ac_cv_implicit_use_isorropia=no ac_cv_implicit_use_teuchos=no ac_cv_ml_using_amesos_default=no ac_cv_ml_using_aztecoo_default=no ac_cv_ml_using_epetra_default=no ac_cv_ml_using_epetraext_default=no ac_cv_ml_using_galeri_default=no ac_cv_ml_using_ifpack_default=no ac_cv_ml_using_isorropia_default=no ac_cv_ml_using_teuchos_default=no ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_GREP=/bin/grep ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CXXCPP='mpicxx -E' ac_cv_prog_HAVE_PERL=yes ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_f77_g=yes ac_cv_prog_f77_v=-v ac_cv_prog_make_make_set=yes ac_cv_search_pow='none required' ac_cv_search_sqrt='none required' ac_cv_target=x86_64-unknown-linux-gnu ac_cv_use_amesos=no ac_cv_use_aztecoo=no ac_cv_use_epetra=no ac_cv_use_epetraext=no ac_cv_use_examples=yes ac_cv_use_export_makefiles=yes ac_cv_use_galeri=no ac_cv_use_gnumake=no ac_cv_use_ifpack=no ac_cv_use_isorropia=no ac_cv_use_libcheck=yes ac_cv_use_ml_arpack=no ac_cv_use_ml_aztec2_1=no ac_cv_use_ml_benchmarking=no ac_cv_use_ml_complex_maxwell=no ac_cv_use_ml_enrich=no ac_cv_use_ml_examples=no ac_cv_use_ml_flops=no ac_cv_use_ml_memory_checking=no ac_cv_use_ml_metis=no ac_cv_use_ml_multiple_rhs=no ac_cv_use_ml_newtpe=yes ac_cv_use_ml_nox=no ac_cv_use_ml_parasails=no ac_cv_use_ml_parmetis2x=no ac_cv_use_ml_parmetis3x=no ac_cv_use_ml_parpack=no ac_cv_use_ml_superlu2=no ac_cv_use_ml_superlu=no ac_cv_use_ml_superlu_dist=no ac_cv_use_ml_tests=no ac_cv_use_ml_timing=no ac_cv_use_ml_zoltan3=no ac_cv_use_ml_zoltan=no ac_cv_use_petsc=no ac_cv_use_tests=no ac_cv_use_teuchos=no am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_prog_tar_ustar=gnutar ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /home/akselos/software/petsc-3.5.3/arch-linux2-c-debug/externalpackages/ml/config/missing --run aclocal-1.10' ALTERNATE_AR='' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /home/akselos/software/petsc-3.5.3/arch-linux2-c-debug/externalpackages/ml/config/missing --run tar' AUTOCONF='${SHELL} /home/akselos/software/petsc-3.5.3/arch-linux2-c-debug/externalpackages/ml/config/missing --run autoconf' AUTOHEADER='${SHELL} /home/akselos/software/petsc-3.5.3/arch-linux2-c-debug/externalpackages/ml/config/missing --run autoheader' AUTOMAKE='${SHELL} /home/akselos/software/petsc-3.5.3/arch-linux2-c-debug/externalpackages/ml/config/missing --run automake-1.10' AWK='gawk' BLAS_LIBS='-Wl,-rpath,/opt/intel/composer_xe_2015/mkl/lib/intel64 -L/opt/intel/composer_xe_2015/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -Wl,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpi_f90 -lmpi_f77 -lgfortran -lm -Wl,-rpath,/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm' BUILD_MATLAB_FALSE='' BUILD_MATLAB_TRUE='' BUILD_ML_MATLAB_FALSE='' BUILD_ML_MATLAB_TRUE='' BUILD_TESTS_FALSE='' BUILD_TESTS_TRUE='#' CC='mpicc' CCDEPMODE='depmode=gcc3' CFLAGS=' -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2' CPPFLAGS='-I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi' CXX='mpicxx' CXXCPP='mpicxx -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS=' -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2' CYGPATH_W='echo' DEFS='' DEPDIR='.deps' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' F77='mpif90' FFLAGS=' -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -g -O2' FLIBS=' -L/usr//lib -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lmpi_f90 -lmpi_f77 -lmpi -ldl -lhwloc -lgfortran -lm -lquadmath -lpthread' GREP='/bin/grep' HAVE_MPI_FALSE='#' HAVE_MPI_TRUE='' HAVE_PERL='yes' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LAPACK_LIBS='' LDFLAGS='' LIBOBJS='' LIBS='' LTLIBOBJS='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /home/akselos/software/petsc-3.5.3/arch-linux2-c-debug/externalpackages/ml/config/missing --run makeinfo' MATLAB='' MATLAB_EXE='' MATLAB_ROOT='' MATLAB_ROOT_USE_FALSE='' MATLAB_ROOT_USE_TRUE='' MATLAB_USE_FALSE='' MATLAB_USE_TRUE='' MEX='' MEXEXT='' MEXEXT_VALUE='' ML_BENCHMARKING_FALSE='' ML_BENCHMARKING_TRUE='#' ML_BUILD_DIRECTORY='/home/akselos/software/petsc-3.5.3/arch-linux2-c-debug/externalpackages/ml' ML_BUILD_EXAMPLES_FALSE='' ML_BUILD_EXAMPLES_TRUE='#' ML_CFUNC_FALSE='#' ML_CFUNC_TRUE='' ML_MATLAB_INCLUDES='' ML_STANDALONE_MODE_FALSE='#' ML_STANDALONE_MODE_TRUE='' ML_USING_AMESOS_FALSE='' ML_USING_AMESOS_TRUE='#' ML_USING_AZTECOO_FALSE='' ML_USING_AZTECOO_TRUE='#' ML_USING_EPETRAEXT_FALSE='' ML_USING_EPETRAEXT_TRUE='#' ML_USING_EPETRA_FALSE='' ML_USING_EPETRA_TRUE='#' ML_USING_GALERI_FALSE='' ML_USING_GALERI_TRUE='#' ML_USING_IFPACK_FALSE='' ML_USING_IFPACK_TRUE='#' ML_USING_ISORROPIA_FALSE='' ML_USING_ISORROPIA_TRUE='#' ML_USING_NOX_FALSE='' ML_USING_NOX_TRUE='#' ML_USING_TEUCHOS_FALSE='' ML_USING_TEUCHOS_TRUE='#' ML_USING_ZOLTAN_FALSE='' ML_USING_ZOLTAN_TRUE='#' MPI_CC_EXISTS='' MPI_CXX='' MPI_CXX_EXISTS='' MPI_F77_EXISTS='' MPI_TEMP_CXX='' OBJEXT='o' PACKAGE='ml' PACKAGE_BUGREPORT='[email protected]' PACKAGE_NAME='ml' PACKAGE_STRING='ml 6.2' PACKAGE_TARNAME='ml' PACKAGE_VERSION='6.2' PATH_SEPARATOR=':' PERL_EXE='perl' RANLIB='ranlib' SET_MAKE='' SHELL='/bin/bash' STRIP='' SUB_EXAMPLE_FALSE='' SUB_EXAMPLE_TRUE='#' SUB_TEST_FALSE='' SUB_TEST_TRUE='#' TRILINOS_TEMPLATE_OBJS='' USE_ALTERNATE_AR_FALSE='' USE_ALTERNATE_AR_TRUE='#' USING_EXPORT_MAKEFILES_FALSE='#' USING_EXPORT_MAKEFILES_TRUE='' USING_GNUMAKE_FALSE='' USING_GNUMAKE_TRUE='#' USING_PERL_FALSE='#' USING_PERL_TRUE='' VERSION='6.2' ac_aux_dir='config' ac_ct_CC='' ac_ct_CXX='' ac_ct_F77='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__quote='' am__tar='tar --format=ustar -chf - "$$tardir"' am__untar='tar -xf -' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='$(SHELL) /home/akselos/software/petsc-3.5.3/arch-linux2-c-debug/externalpackages/ml/config/install-sh' libdir='/home/akselos/software/petsc-3.5.3/arch-linux2-c-debug/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/home/akselos/software/petsc-3.5.3/arch-linux2-c-debug' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target='x86_64-unknown-linux-gnu' target_alias='' target_cpu='x86_64' target_os='linux-gnu' target_vendor='unknown' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define PACKAGE_NAME "ml" #define PACKAGE_TARNAME "ml" #define PACKAGE_VERSION "6.2" #define PACKAGE_STRING "ml 6.2" #define PACKAGE_BUGREPORT "[email protected]" #define HAVE_MPI #define HAVE_EXPORT_MAKEFILES #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_CSTDLIB 1 #define HAVE_CSTDIO 1 #define HAVE_CASSERT 1 #define HAVE_CMATH 1 #define HAVE_IOMANIP 1 #define HAVE_IOSTREAM 1 #define HAVE_STRING 1 #define HAVE_MALLOC_H 1 #define HAVE_NAMESPACES #define HAVE_STL #define HAVE_BOOL #define HAVE_MUTABLE #define HAVE_NEW_FOR_SCOPING #define HAVE_STD_SPRINTF #define HAVE_CFUNC #define HAVE_ML_NEW_T_PE 1 #define ML_BIG_INT int #define HAVE_LIBCHECK #define F77_FUNC(name,NAME) name ## _ #define F77_FUNC_(name,NAME) name ## _ configure: exit 1
