> On Jun 8, 2015, at 12:16 PM, Michele Rosso <[email protected]> wrote: > > Hi Barry, > > I run a small test case like you suggested: this results in no error, but the > problem with log_summary still persists. > Please find attached the output of log_summary.
I cannot explain why nothing gets listed in the log summary. It appears to have used the command line options and hence a Krylov solver. I am dumbfounded why no events are listed in the log_summary. Barry > > Thanks, > Michele > > On Fri, 2015-06-05 at 21:34 -0500, Barry Smith wrote: >> [NID 04001] 2015-06-04 19:07:24 Apid 25022256: initiated application >> termination >> Application 25022256 exit signals: Killed >> Application 25022256 resources: utime ~271s, stime ~15107s, Rss ~188536, >> inblocks ~5078831, outblocks ~12517984 >> >> Usually this kind of message indicates that either the OS or the batch >> system killed the process for some reason: often because it ran out of time >> or maybe memory. >> >> Can you run in batch with a request for more time? Do smaller jobs run >> through ok? >> >> If utime means user time and stime means system time then this is very >> bad, the system time is HUGE relative to the user time. >> >> Barry >> >> >> >> >> >> > On Jun 5, 2015, at 9:22 PM, Michele Rosso <[email protected]> wrote: >> > >> > Hi, >> > >> > I am checking the performances of my code via -log_summary, but the output >> > is incomplete (please see attached) file. >> > I configured petsc with the following options: >> > >> > if __name__ == '__main__': >> > import sys >> > import os >> > sys.path.insert(0, os.path.abspath('config')) >> > import configure >> > configure_options = [ >> > '--with-batch=1 ', >> > '--known-mpi-shared=0 ', >> > '--known-mpi-shared-libraries=0', >> > '--known-memcmp-ok ', >> > '--with-blas-lapack-lib=-L/opt/acml/5.3.1/gfortran64/lib -lacml', >> > '--COPTFLAGS=-march=bdver1 -fopenmp -O3 -ffast-math -fPIC ', >> > '--FOPTFLAGS=-march=bdver1 -fopenmp -O3 -ffast-math -fPIC ', >> > '--CXXOPTFLAGS=-march=bdver1 -fopenmp -O3 -ffast-math -fPIC ', >> > '--with-x=0 ', >> > '--with-debugging=0', >> > '--with-clib-autodetect=0 ', >> > '--with-cxxlib-autodetect=0 ', >> > '--with-fortranlib-autodetect=0 ', >> > '--with-shared-libraries=0 ', >> > '--with-mpi-compilers=1 ', >> > '--with-cc=cc ', >> > '--with-cxx=CC ', >> > '--with-fc=ftn ', >> > # '--with-64-bit-indices', >> > '--download-hypre=1', >> > '--download-blacs=1 ', >> > '--download-scalapack=1 ', >> > '--download-superlu_dist=1 ', >> > '--download-metis=1 ', >> > '--download-parmetis=1 ', >> > ] >> > configure.petsc_configure(configure_options) >> > >> > Any idea about this issue? >> > Thanks, >> > >> > Michele >> > >> > >> > >> > >> > <log_summary> >> >> >> > > <outfile.txt>
