On Wed, Jul 1, 2015 at 3:52 PM, Michele Rosso <[email protected]> wrote:
> Hi Barry, > > I accidentally found out what triggers the problem with log_summary. > If I specify log_summary from command line, it works as expected. If > instead I open and load an options file with -log_summary in it, > the output is incomplete. > Same experience here. Many stuffs right before "Memory usage is given in bytes:" do not show if '-log_summary' is specified in input file. Ling > I am actually concerned about using options files now because this weird > behavior could affect the correct loading of other options as well. > > Michele > > > On Fri, 2015-06-05 at 21:34 -0500, Barry Smith wrote: > > [NID 04001] 2015-06-04 19:07:24 Apid 25022256: initiated application > termination > Application 25022256 exit signals: Killed > Application 25022256 resources: utime ~271s, stime ~15107s, Rss ~188536, > inblocks ~5078831, outblocks ~12517984 > > Usually this kind of message indicates that either the OS or the batch > system killed the process for some reason: often because it ran out of time > or maybe memory. > > Can you run in batch with a request for more time? Do smaller jobs run > through ok? > > If utime means user time and stime means system time then this is very > bad, the system time is HUGE relative to the user time. > > Barry > > > > > On Jun 5, 2015, at 9:22 PM, Michele Rosso <[email protected]> wrote:> > Hi,> > > > I am checking the performances of my code via -log_summary, but the output > > is incomplete (please see attached) file.> I configured petsc with the > > following options:> > if __name__ == '__main__':> import sys> import > > os> sys.path.insert(0, os.path.abspath('config'))> import configure> > > configure_options = [> '--with-batch=1 ',> '--known-mpi-shared=0 > > ',> '--known-mpi-shared-libraries=0',> '--known-memcmp-ok ',> > > '--with-blas-lapack-lib=-L/opt/acml/5.3.1/gfortran64/lib -lacml',> > > '--COPTFLAGS=-march=bdver1 -fopenmp -O3 -ffast-math -fPIC ',> > > '--FOPTFLAGS=-march=bdver1 -fopenmp -O3 -ffast-math -fPIC ',> > > '--CXXOPTFLAGS=-march=bdver1 -fopenmp -O3 -ffast-math -fPIC ',> > > '--with-x=0 ',> '--with-debugging=0',> '--with-clib-autodetect=0 > > ',> '--with-cxxlib-autodetect=0 ',> '--with-fortranlib-autodetect=0 > > ',> '--with-shared-libraries=0 ',> '--with-mpi-compilers=1 ',> > > '--with-cc=cc ',> '--with-cxx=CC ',> '--with-fc=ftn ',> # > > '--with-64-bit-indices',> '--download-hypre=1',> > > '--download-blacs=1 ',> '--download-scalapack=1 ',> > > '--download-superlu_dist=1 ',> '--download-metis=1 ',> > > '--download-parmetis=1 ',> ]> > > configure.petsc_configure(configure_options)> > Any idea about this issue?> > > Thanks,> > Michele> > > > > <log_summary> > > >
