I am on Mac OS X, so I am using the Homebrew version, SLEPc 3.6.2. PETSc is 3.6.3. The options for the CISS have worked before, with simpler matrices. As for the options, I am using an ‘ellipse’ region (around 0, with radius=0.16 and vscale=0.5), the problem type is EPS_HEP. For the EPS settings, I set the tolerance to 1e-10 and maxit=200.
- Jonatan > On 09 May 2016, at 18:16, Jose E. Roman <[email protected]> wrote: > > Is this with the master branch of SLEPc? > Which options are setting for the CISS solver? > > Jose > > >> El 9 may 2016, a las 18:03, Jonatan Midtgaard <[email protected]> >> escribió: >> >> Hi all. I am using the EPSCISS solver in SLEPc to calculate eigenvalues of a >> Hermitian matrix close to the origin. (Actually, it is only very nearly >> Hermitian, but this happens also for NHEP-routines). I am running with 4 >> cores, and the matrix prints fine with MatView() just before the EPSSolve. >> Anyhow, I get the following error: >> (I am new to both PETSc and this mailing list. Should error messages be >> attached or pasted into the body?) >> >> [2]PETSC ERROR: --------------------- Error Message >> -------------------------------------------------------------- >> [2]PETSC ERROR: Petsc has generated inconsistent data >> [2]PETSC ERROR: ith 3844 block entry 7688 not owned by any process, upper >> bound 7688 >> [2]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for >> trouble shooting. >> [2]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015 >> [2]PETSC ERROR: hello on a complex named st-d13411.nfit.au.dk by jonat4n Mon >> May 9 17:47:26 2016 >> [2]PETSC ERROR: Configure options CC=/usr/local/bin/mpicc >> CXX=/usr/local/bin/mpicxx F77=/usr/local/bin/mpif77 FC=/usr/local/bin/mpif90 >> --with-shared-libraries=1 --with-pthread=0 --with-openmp=0 >> --with-debugging=0 --with-ssl=0 >> --with-superlu_dist-include=/usr/local/opt/superlu_dist/include/superlu_dist >> --with-superlu_dist-lib="-L/usr/local/opt/superlu_dist/lib -lsuperlu_dist" >> --with-superlu-include=/usr/local/Cellar/superlu43/4.3_1/include/superlu >> --with-superlu-lib="-L/usr/local/Cellar/superlu43/4.3_1/lib -lsuperlu" >> --with-fftw-dir=/usr/local/opt/fftw --with-netcdf-dir=/usr/local/opt/netcdf >> --with-suitesparse-dir=/usr/local/opt/suite-sparse >> --with-hdf5-dir=/usr/local/opt/hdf5 --with-metis-dir=/usr/local/opt/metis >> --with-parmetis-dir=/usr/local/opt/parmetis >> --with-scalapack-dir=/usr/local/opt/scalapack >> --with-mumps-dir=/usr/local/opt/mumps/libexec --with-x=0 >> --prefix=/usr/local/Cellar/petsc/3.6.3_4/complex --with-scalar-type=complex >> [2]PETSC ERROR: #1 VecScatterCreate_PtoS() line 2339 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c >> [2]PETSC ERROR: #2 VecScatterCreate_StoP() line 2795 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c >> [2]PETSC ERROR: #3 VecScatterCreate_PtoP() line 2984 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c >> [2]PETSC ERROR: #4 VecScatterCreate() line 1570 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vscat.c >> [2]PETSC ERROR: #5 PCSetUp_Redundant() line 133 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/pc/impls/redundant/redundant.c >> [2]PETSC ERROR: #6 PCSetUp() line 983 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/pc/interface/precon.c >> [3]PETSC ERROR: --------------------- Error Message >> -------------------------------------------------------------- >> [3]PETSC ERROR: Petsc has generated inconsistent data >> [3]PETSC ERROR: ith 1922 block entry 7688 not owned by any process, upper >> bound 7688 >> [3]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for >> trouble shooting. >> [3]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015 >> [3]PETSC ERROR: hello on a complex named st-d13411.nfit.au.dk by jonat4n Mon >> May 9 17:47:26 2016 >> [3]PETSC ERROR: Configure options CC=/usr/local/bin/mpicc >> CXX=/usr/local/bin/mpicxx F77=/usr/local/bin/mpif77 FC=/usr/local/bin/mpif90 >> --with-shared-libraries=1 --with-pthread=0 --with-openmp=0 >> --with-debugging=0 --with-ssl=0 >> --with-superlu_dist-include=/usr/local/opt/superlu_dist/include/superlu_dist >> --with-superlu_dist-lib="-L/usr/local/opt/superlu_dist/lib -lsuperlu_dist" >> --with-superlu-include=/usr/local/Cellar/superlu43/4.3_1/include/superlu >> --with-superlu-lib="-L/usr/local/Cellar/superlu43/4.3_1/lib -lsuperlu" >> --with-fftw-dir=/usr/local/opt/fftw --with-netcdf-dir=/usr/local/opt/netcdf >> --with-suitesparse-dir=/usr/local/opt/suite-sparse >> --with-hdf5-dir=/usr/local/opt/hdf5 --with-metis-dir=/usr/local/opt/metis >> --with-parmetis-dir=/usr/local/opt/parmetis >> --with-scalapack-dir=/usr/local/opt/scalapack >> --with-mumps-dir=/usr/local/opt/mumps/libexec --with-x=0 >> --prefix=/usr/local/Cellar/petsc/3.6.3_4/complex --with-scalar-type=complex >> [3]PETSC ERROR: #1 VecScatterCreate_PtoS() line 2339 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c >> [3]PETSC ERROR: #2 VecScatterCreate_StoP() line 2795 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c >> [3]PETSC ERROR: #3 VecScatterCreate_PtoP() line 2984 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c >> [3]PETSC ERROR: #4 VecScatterCreate() line 1570 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vscat.c >> [3]PETSC ERROR: #5 PCSetUp_Redundant() line 133 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/pc/impls/redundant/redundant.c >> [3]PETSC ERROR: #6 PCSetUp() line 983 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/pc/interface/precon.c >> [3]PETSC ERROR: #7 KSPSetUp() line 332 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/ksp/interface/itfunc.c >> [3]PETSC ERROR: [1]PETSC ERROR: --------------------- Error Message >> -------------------------------------------------------------- >> [1]PETSC ERROR: Petsc has generated inconsistent data >> [1]PETSC ERROR: ith 5766 block entry 7688 not owned by any process, upper >> bound 7688 >> [1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for >> trouble shooting. >> [1]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015 >> [1]PETSC ERROR: hello on a complex named st-d13411.nfit.au.dk by jonat4n Mon >> May 9 17:47:26 2016 >> [1]PETSC ERROR: Configure options CC=/usr/local/bin/mpicc >> CXX=/usr/local/bin/mpicxx F77=/usr/local/bin/mpif77 FC=/usr/local/bin/mpif90 >> --with-shared-libraries=1 --with-pthread=0 --with-openmp=0 >> --with-debugging=0 --with-ssl=0 >> --with-superlu_dist-include=/usr/local/opt/superlu_dist/include/superlu_dist >> --with-superlu_dist-lib="-L/usr/local/opt/superlu_dist/lib -lsuperlu_dist" >> --with-superlu-include=/usr/local/Cellar/superlu43/4.3_1/include/superlu >> --with-superlu-lib="-L/usr/local/Cellar/superlu43/4.3_1/lib -lsuperlu" >> --with-fftw-dir=/usr/local/opt/fftw --with-netcdf-dir=/usr/local/opt/netcdf >> --with-suitesparse-dir=/usr/local/opt/suite-sparse >> --with-hdf5-dir=/usr/local/opt/hdf5 --with-metis-dir=/usr/local/opt/metis >> --with-parmetis-dir=/usr/local/opt/parmetis >> --with-scalapack-dir=/usr/local/opt/scalapack >> --with-mumps-dir=/usr/local/opt/mumps/libexec --with-x=0 >> --prefix=/usr/local/Cellar/petsc/3.6.3_4/complex --with-scalar-type=complex >> [1]PETSC ERROR: #1 VecScatterCreate_PtoS() line 2339 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c >> [1]PETSC ERROR: #2 VecScatterCreate_StoP() line 2795 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c >> [1]PETSC ERROR: #3 VecScatterCreate_PtoP() line 2984 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c >> [1]PETSC ERROR: #4 VecScatterCreate() line 1570 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vscat.c >> [1]PETSC ERROR: #5 PCSetUp_Redundant() line 133 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/pc/impls/redundant/redundant.c >> [1]PETSC ERROR: #6 PCSetUp() line 983 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/pc/interface/precon.c >> [1]PETSC ERROR: #7 KSPSetUp() line 332 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/ksp/interface/itfunc.c >> [1]PETSC ERROR: #8 KSPSolve() line 546 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/ksp/interface/itfunc.c >> [1]PETSC ERROR: [2]PETSC ERROR: #7 KSPSetUp() line 332 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/ksp/interface/itfunc.c >> [2]PETSC ERROR: #8 KSPSolve() line 546 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/ksp/interface/itfunc.c >> [2]PETSC ERROR: #9 SolveLinearSystem() line 337 in >> /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/impls/ciss/ciss.c >> [2]PETSC ERROR: #10 EPSSolve_CISS() line 868 in >> /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/impls/ciss/ciss.c >> [2]PETSC ERROR: #11 EPSSolve() line 101 in >> /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/interface/epssolve.c >> [2]PETSC ERROR: #12 main() line 795 in hello.c >> [2]PETSC ERROR: PETSc Option Table entries: >> [2]PETSC ERROR: -n 31 >> [2]PETSC ERROR: #8 KSPSolve() line 546 in >> /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/ksp/interface/itfunc.c >> [3]PETSC ERROR: #9 SolveLinearSystem() line 337 in >> /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/impls/ciss/ciss.c >> [3]PETSC ERROR: #10 EPSSolve_CISS() line 868 in >> /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/impls/ciss/ciss.c >> [3]PETSC ERROR: #11 EPSSolve() line 101 in >> /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/interface/epssolve.c >> [3]PETSC ERROR: #12 main() line 795 in hello.c >> [3]PETSC ERROR: PETSc Option Table entries: >> [3]PETSC ERROR: -n 31 >> #9 SolveLinearSystem() line 337 in >> /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/impls/ciss/ciss.c >> [1]PETSC ERROR: #10 EPSSolve_CISS() line 868 in >> /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/impls/ciss/ciss.c >> [1]PETSC ERROR: #11 EPSSolve() line 101 in >> /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/interface/epssolve.c >> [1]PETSC ERROR: #12 main() line 795 in hello.c >> [1]PETSC ERROR: PETSc Option Table entries: >> [1]PETSC ERROR: -n 31 >> ----------------End of Error Message -------send entire error message to >> [email protected] >> [3]PETSC ERROR: ----------------End of Error Message -------send entire >> error message to [email protected] >> [1]PETSC ERROR: ----------------End of Error Message -------send entire >> error message to [email protected] >> -------------------------------------------------------------------------- >> MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD >> with errorcode 77. >> >> NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. >> You may or may not see output from other processes, depending on >> exactly when Open MPI kills them. >> -------------------------------------------------------------------------- >> [0]PETSC ERROR: >> ------------------------------------------------------------------------ >> [0]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the >> batch system) has told this process to end >> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger >> [0]PETSC ERROR: or see >> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind >> [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X >> to find memory corruption errors >> [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and >> run >> [0]PETSC ERROR: to get more information on the crash. >> [0]PETSC ERROR: --------------------- Error Message >> -------------------------------------------------------------- >> [0]PETSC ERROR: Signal received >> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for >> trouble shooting. >> [0]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015 >> [0]PETSC ERROR: hello on a complex named st-d13411.nfit.au.dk by jonat4n Mon >> May 9 17:47:26 2016 >> [0]PETSC ERROR: Configure options CC=/usr/local/bin/mpicc >> CXX=/usr/local/bin/mpicxx F77=/usr/local/bin/mpif77 FC=/usr/local/bin/mpif90 >> --with-shared-libraries=1 --with-pthread=0 --with-openmp=0 >> --with-debugging=0 --with-ssl=0 >> --with-superlu_dist-include=/usr/local/opt/superlu_dist/include/superlu_dist >> --with-superlu_dist-lib="-L/usr/local/opt/superlu_dist/lib -lsuperlu_dist" >> --with-superlu-include=/usr/local/Cellar/superlu43/4.3_1/include/superlu >> --with-superlu-lib="-L/usr/local/Cellar/superlu43/4.3_1/lib -lsuperlu" >> --with-fftw-dir=/usr/local/opt/fftw --with-netcdf-dir=/usr/local/opt/netcdf >> --with-suitesparse-dir=/usr/local/opt/suite-sparse >> --with-hdf5-dir=/usr/local/opt/hdf5 --with-metis-dir=/usr/local/opt/metis >> --with-parmetis-dir=/usr/local/opt/parmetis >> --with-scalapack-dir=/usr/local/opt/scalapack >> --with-mumps-dir=/usr/local/opt/mumps/libexec --with-x=0 >> --prefix=/usr/local/Cellar/petsc/3.6.3_4/complex --with-scalar-type=complex >> [0]PETSC ERROR: #1 User provided function() line 0 in unknown file >> [st-d13411.nfit.au.dk:90621] 3 more processes have sent help message >> help-mpi-api.txt / mpi-abort >> [st-d13411.nfit.au.dk:90621] Set MCA parameter "orte_base_help_aggregate" to >> 0 to see all help / error messages >> >> ——————————— >> When running with 1 core, I get the error message: >> >> [0]PETSC ERROR: --------------------- Error Message >> -------------------------------------------------------------- >> [0]PETSC ERROR: Error in external library >> [0]PETSC ERROR: Error in Lapack xGGES 154 >> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for >> trouble shooting. >> [0]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015 >> [0]PETSC ERROR: hello on a complex named st-d13411.nfit.au.dk by jonat4n Mon >> May 9 17:59:03 2016 >> [0]PETSC ERROR: Configure options CC=/usr/local/bin/mpicc >> CXX=/usr/local/bin/mpicxx F77=/usr/local/bin/mpif77 FC=/usr/local/bin/mpif90 >> --with-shared-libraries=1 --with-pthread=0 --with-openmp=0 >> --with-debugging=0 --with-ssl=0 >> --with-superlu_dist-include=/usr/local/opt/superlu_dist/include/superlu_dist >> --with-superlu_dist-lib="-L/usr/local/opt/superlu_dist/lib -lsuperlu_dist" >> --with-superlu-include=/usr/local/Cellar/superlu43/4.3_1/include/superlu >> --with-superlu-lib="-L/usr/local/Cellar/superlu43/4.3_1/lib -lsuperlu" >> --with-fftw-dir=/usr/local/opt/fftw --with-netcdf-dir=/usr/local/opt/netcdf >> --with-suitesparse-dir=/usr/local/opt/suite-sparse >> --with-hdf5-dir=/usr/local/opt/hdf5 --with-metis-dir=/usr/local/opt/metis >> --with-parmetis-dir=/usr/local/opt/parmetis >> --with-scalapack-dir=/usr/local/opt/scalapack >> --with-mumps-dir=/usr/local/opt/mumps/libexec --with-x=0 >> --prefix=/usr/local/Cellar/petsc/3.6.3_4/complex --with-scalar-type=complex >> [0]PETSC ERROR: #1 DSSolve_GNHEP() line 581 in >> /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/sys/classes/ds/impls/gnhep/dsgnhep.c >> [0]PETSC ERROR: #2 DSSolve() line 543 in >> /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/sys/classes/ds/interface/dsops.c >> [0]PETSC ERROR: #3 EPSSolve_CISS() line 943 in >> /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/impls/ciss/ciss.c >> [0]PETSC ERROR: #4 EPSSolve() line 101 in >> /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/interface/epssolve.c >> [0]PETSC ERROR: #5 main() line 795 in hello.c >> [0]PETSC ERROR: PETSc Option Table entries: >> [0]PETSC ERROR: -n 31 >> [0]PETSC ERROR: ----------------End of Error Message -------send entire >> error message to [email protected] >
