Send configure.log to [email protected] Looks like a troubled BLAS/LAPACK install.
Barry > On Sep 14, 2016, at 12:52 PM, Gideon Simpson <[email protected]> wrote: > > I was trying to compile a new version of 3.7.3, and I noticed the following. > First, when building the library, I see, at the end: > > CLINKER /opt/petsc-3.7.3/arch-darwin-c-debug/lib/libpetsc.3.7.3.dylib > ld: warning: could not create compact unwind for _dhseqr_: stack subq > instruction is too different from dwarf stack size > DSYMUTIL /opt/petsc-3.7.3/arch-darwin-c-debug/lib/libpetsc.3.7.3.dylib > > Next, when I try to run the tests, I see: > > Running test examples to verify correct installation > Using PETSC_DIR=/opt/petsc-3.7.3 and PETSC_ARCH=arch-darwin-c-debug > *******************Error detected during compile or link!******************* > See http://www.mcs.anl.gov/petsc/documentation/faq.html > /opt/petsc-3.7.3/src/snes/examples/tutorials ex19 > ********************************************************************************* > /opt/petsc-3.7.3/arch-darwin-c-debug/bin/mpicc -o ex19.o -c -Wall > -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Qunused-arguments > -fvisibility=hidden -g3 -I/opt/petsc-3.7.3/include > -I/opt/petsc-3.7.3/arch-darwin-c-debug/include -I/opt/local/include > -I/opt/X11/include `pwd`/ex19.c > /opt/petsc-3.7.3/arch-darwin-c-debug/bin/mpicc -Wl,-multiply_defined,suppress > -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs > -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined > -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall > -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Qunused-arguments > -fvisibility=hidden -g3 -o ex19 ex19.o > -Wl,-rpath,/opt/petsc-3.7.3/arch-darwin-c-debug/lib > -L/opt/petsc-3.7.3/arch-darwin-c-debug/lib -lpetsc > -Wl,-rpath,/opt/petsc-3.7.3/arch-darwin-c-debug/lib -lsuperlu_dist -lcmumps > -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lparmetis -lmetis -lsuperlu > -lscalapack -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd > -lsuitesparseconfig -llapack -lblas -Wl,-rpath,/opt/local/lib > -L/opt/local/lib -lhwloc -lptesmumps -lptscotch -lptscotcherr -lscotch > -lscotcherr -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11 > -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/8.0.0/lib/darwin > > -L/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/8.0.0/lib/darwin > -lmpifort -lgfortran > -Wl,-rpath,/opt/local/lib/gcc5/gcc/x86_64-apple-darwin15/5.4.0 > -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin15/5.4.0 > -Wl,-rpath,/opt/local/lib/gcc5 -L/opt/local/lib/gcc5 -lgfortran > -lgcc_ext.10.5 -lquadmath -lm -lclang_rt.osx -lmpicxx -lc++ > -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/8.0.0/lib/darwin > > -L/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/8.0.0/lib/darwin > -lclang_rt.osx -lm -lz -Wl,-rpath,/opt/petsc-3.7.3/arch-darwin-c-debug/lib > -L/opt/petsc-3.7.3/arch-darwin-c-debug/lib -ldl -lmpi -lpmpi -lSystem > -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/8.0.0/lib/darwin > > -L/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/8.0.0/lib/darwin > -lclang_rt.osx -ldl > Undefined symbols for architecture x86_64: > "_ATL_cGetNB", referenced from: > import-atom in libpetsc.dylib > "_ATL_dGetNB", referenced from: > import-atom in libpetsc.dylib > "_ATL_dgemoveT", referenced from: > import-atom in libpetsc.dylib > "_ATL_dger", referenced from: > import-atom in libpetsc.dylib > "_ATL_dsqtrans", referenced from: > import-atom in libpetsc.dylib > "_ATL_sGetNB", referenced from: > import-atom in libpetsc.dylib > "_ATL_xerbla", referenced from: > import-atom in libpetsc.dylib > "_ATL_zGetNB", referenced from: > import-atom in libpetsc.dylib > ld: symbol(s) not found for architecture x86_64 > clang: error: linker command failed with exit code 1 (use -v to see > invocation) > makefile:108: recipe for target 'ex19' failed > gmake[3]: [ex19] Error 1 (ignored) > /bin/rm -f ex19.o > > > -gideon >
