Do you have MacPorts installed? With Blas? Perhaps thats the source of conflict..
Satish On Wed, 14 Sep 2016, Barry Smith wrote: > > Send configure.log to [email protected] Looks like a troubled > BLAS/LAPACK install. > > Barry > > > On Sep 14, 2016, at 12:52 PM, Gideon Simpson <[email protected]> > > wrote: > > > > I was trying to compile a new version of 3.7.3, and I noticed the > > following. First, when building the library, I see, at the end: > > > > CLINKER /opt/petsc-3.7.3/arch-darwin-c-debug/lib/libpetsc.3.7.3.dylib > > ld: warning: could not create compact unwind for _dhseqr_: stack subq > > instruction is too different from dwarf stack size > > DSYMUTIL /opt/petsc-3.7.3/arch-darwin-c-debug/lib/libpetsc.3.7.3.dylib > > > > Next, when I try to run the tests, I see: > > > > Running test examples to verify correct installation > > Using PETSC_DIR=/opt/petsc-3.7.3 and PETSC_ARCH=arch-darwin-c-debug > > *******************Error detected during compile or link!******************* > > See http://www.mcs.anl.gov/petsc/documentation/faq.html > > /opt/petsc-3.7.3/src/snes/examples/tutorials ex19 > > ********************************************************************************* > > /opt/petsc-3.7.3/arch-darwin-c-debug/bin/mpicc -o ex19.o -c -Wall > > -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas > > -Qunused-arguments -fvisibility=hidden -g3 -I/opt/petsc-3.7.3/include > > -I/opt/petsc-3.7.3/arch-darwin-c-debug/include -I/opt/local/include > > -I/opt/X11/include `pwd`/ex19.c > > /opt/petsc-3.7.3/arch-darwin-c-debug/bin/mpicc > > -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress > > -Wl,-commons,use_dylibs -Wl,-search_paths_first > > -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress > > -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings > > -Wno-strict-aliasing -Wno-unknown-pragmas -Qunused-arguments > > -fvisibility=hidden -g3 -o ex19 ex19.o > > -Wl,-rpath,/opt/petsc-3.7.3/arch-darwin-c-debug/lib > > -L/opt/petsc-3.7.3/arch-darwin-c-debug/lib -lpetsc > > -Wl,-rpath,/opt/petsc-3.7.3/arch-darwin-c-debug/lib -lsuperlu_dist -lcmumps > > -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lparmetis -lmetis > > -lsuperlu -lscalapack -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd > > -lcamd -lamd -lsuitesparseconfig -llapack -lblas -Wl,-rpath,/opt/local/lib > > -L/opt/local/lib -lhwloc -lptesmumps -lptscotch -lptscotcherr -lscotch > > -lscotcherr -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11 > > -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/8.0.0/lib/darwin > > > > -L/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/8.0.0/lib/darwin > > -lmpifort -lgfortran > > -Wl,-rpath,/opt/local/lib/gcc5/gcc/x86_64-apple-darwin15/5.4.0 > > -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin15/5.4.0 > > -Wl,-rpath,/opt/local/lib/gcc5 -L/opt/local/lib/gcc5 -lgfortran > > -lgcc_ext.10.5 -lquadmath -lm -lclang_rt.osx -lmpicxx -lc++ > > -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/8.0.0/lib/darwin > > > > -L/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/8.0.0/lib/darwin > > -lclang_rt.osx -lm -lz -Wl,-rpath,/opt/petsc-3.7.3/arch-darwin-c-debug/lib > > -L/opt/petsc-3.7.3/arch-darwin-c-debug/lib -ldl -lmpi -lpmpi -lSystem > > -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/8.0.0/lib/darwin > > > > -L/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/8..0.0/lib/darwin > > -lclang_rt.osx -ldl > > Undefined symbols for architecture x86_64: > > "_ATL_cGetNB", referenced from: > > import-atom in libpetsc.dylib > > "_ATL_dGetNB", referenced from: > > import-atom in libpetsc.dylib > > "_ATL_dgemoveT", referenced from: > > import-atom in libpetsc.dylib > > "_ATL_dger", referenced from: > > import-atom in libpetsc.dylib > > "_ATL_dsqtrans", referenced from: > > import-atom in libpetsc.dylib > > "_ATL_sGetNB", referenced from: > > import-atom in libpetsc.dylib > > "_ATL_xerbla", referenced from: > > import-atom in libpetsc.dylib > > "_ATL_zGetNB", referenced from: > > import-atom in libpetsc.dylib > > ld: symbol(s) not found for architecture x86_64 > > clang: error: linker command failed with exit code 1 (use -v to see > > invocation) > > makefile:108: recipe for target 'ex19' failed > > gmake[3]: [ex19] Error 1 (ignored) > > /bin/rm -f ex19.o > > > > > > -gideon > > > >
