no worries:
service7>501% ls
/home1/caparmor/aponte/petsc/petsc-3.7.4/linux-gnu-intel/externalpackages
petsc4py-3.7.0
service7>502%
thanks
aurelien
Le 17/12/2016 à 21:24, Barry Smith a écrit :
Please do
ls /home1/caparmor/aponte/petsc/petsc-3.7.4/linux-gnu-intel/externalpackages
and send the results. It looks like we may have a bug in checking for the
correct file.
Sorry about this, it is not suppose to be this difficult.
Barry
On Dec 17, 2016, at 2:18 PM, Aurelien Ponte <[email protected]> wrote:
Ok, while waiting for an answer for the pip approach, I am trying another one:
module load python/2.7.10_gnu-4.9.2
setenv MPICC mpiicc
setenv PETSC_DIR /home1/caparmor/aponte/petsc/petsc-3.7.4
setenv PETSC_ARCH linux-gnu-intel
wget http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.7.4.tar.gz
wget https://bitbucket.org/petsc/petsc4py/downloads/petsc4py-3.7.0.tar.gz
pip install --user --upgrade cython (not sure cython is required if not in
dev mode)
cd /home1/caparmor/aponte/petsc/petsc-3.7.4
./configure PETSC_ARCH=linux-gnu-intel --with-cc=mpiicc --with-fc=mpiifort
--with-blas-lapack-dir=/appli/intel/Compiler/11.1/073/mkl --with-64-bit-indices
--download-petsc4py=/home1/caparmor/aponte/petsc/petsc4py-3.7.0.tar.gz
But the latter fails with the following message (which I do not understand as
petsc4py-3.7.0.tar.gz is indeed in the right place):
================================================================================
TEST configureLibrary from
config.packages.petsc4py(/home1/caparmor/aponte/petsc/petsc-3.7.4/config/BuildSystem/config/packages/petsc4py.py:82)
TESTING: configureLibrary from
config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:82)
Looking for PETSC4PY at git.petsc4py, hg.petsc4py or a
directory starting with petsc-petsc4py
Could not locate an existing copy of PETSC4PY:
[]
Downloading petsc4py
===============================================================================
Trying to download
file:///home1/caparmor/aponte/petsc/petsc4py-3.7.0.tar.gz for PETSC4PY
===============================================================================
Downloading
file:///home1/caparmor/aponte/petsc/petsc4py-3.7.0.tar.gz to
/home1/caparmor/aponte/petsc/petsc-3.7.4/linux-gnu-intel/externalpackages/_d_petsc4py-3.7.0.tar.gz
Extracting
/home1/caparmor/aponte/petsc/petsc-3.7.4/linux-gnu-intel/externalpackages/_d_petsc4py-3.7.0.tar.gz
Executing: cd /home1/caparmor/aponte/petsc/petsc-3.7.4/linux-gnu-intel/externalpackages;
chmod -R a+r petsc4py-3.7.0;find petsc4py-3.7.0 -type d -name "*" -exec chmod
a+rx {} \;
Looking for PETSC4PY at git.petsc4py, hg.petsc4py or a
directory starting with petsc-petsc4py
Could not locate an existing copy of PETSC4PY:
['petsc4py-3.7.0']
ERROR: Failed to download PETSC4PY
**** Configure header /tmp/petsc-ViI4NW/confdefs.h ****
any ideas for this one?
thanks
aurelien
Le 17/12/2016 à 20:19, Barry Smith a écrit :
Looks like --install-option= are options for pip not the underlying package.
Lisandro, how does one do what seems to be a simple request?
On Dec 17, 2016, at 9:00 AM, Aurelien Ponte <[email protected]> wrote:
Hi all,
I am trying to install petsc4py and petsc with the --with-64-bit-indices option.
I followed the pip install described on the petsc4py bitbucket with some slight
modifications:
module load python/2.7.10_gnu-4.9.2
wget https://bootstrap.pypa.io/get-pip.py
python get-pip.py --user
setenv MPICC mpiicc
pip install --user --upgrade mpi4py
pip install --user --upgrade numpy
pip install --user petsc petsc4py --install-option="--with-64-bit-indices"
but I do get the error copied below.
Any ideas on what I could do?
Should I try to use a different method of install?
thanks
aurelien
service7>479% pip install --user petsc petsc4py
--install-option="--with-64-bit-indices"
/home1/caparmor/aponte/.local/lib/python2.7/site-packages/pip/commands/install.py:194:
UserWarning: Disabling all use of wheels due to the use of --build-options /
--global-options / --install-options.
cmdoptions.check_install_build_global(options)
Collecting petsc
Downloading petsc-3.7.2.1.tar.gz (8.7MB)
100% |################################| 8.7MB 116kB/s
Collecting petsc4py
Downloading petsc4py-3.7.0.tar.gz (1.7MB)
100% |################################| 1.7MB 415kB/s
Requirement already satisfied: numpy in
/home1/caparmor/aponte/.local/lib/python2.7/site-packages (from petsc4py)
Skipping bdist_wheel for petsc, due to binaries being disabled for it.
Skipping bdist_wheel for petsc4py, due to binaries being disabled for it.
Installing collected packages: petsc, petsc4py
Running setup.py install for petsc ... error
Complete output from command /appli/python/2.7.10_gcc-4.9.2/python-2.7.10/bin/python
-u -c "import setuptools,
tokenize;__file__='/tmp/pip-build-3C49gO/petsc/setup.py';f=getattr(tokenize, 'open',
open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code,
__file__, 'exec'))" install --record /tmp/pip-iuRtIV-record/install-record.txt
--single-version-externally-managed --compile --with-64-bit-indices --user --prefix=:
usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
or: -c --help [cmd1 cmd2 ...]
or: -c --help-commands
or: -c cmd --help
error: option --with-64-bit-indices not recognized
----------------------------------------
Command "/appli/python/2.7.10_gcc-4.9.2/python-2.7.10/bin/python -u -c "import
setuptools, tokenize;__file__='/tmp/pip-build-3C49gO/petsc/setup.py';f=getattr(tokenize, 'open',
open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__,
'exec'))" install --record /tmp/pip-iuRtIV-record/install-record.txt
--single-version-externally-managed --compile --with-64-bit-indices --user --prefix=" failed
with error code 1 in /tmp/pip-build-3C49gO/petsc/
--
Aurélien Ponte
Tel: (+33) 2 98 22 40 73
Fax: (+33) 2 98 22 44 96
UMR 6523, IFREMER
ZI de la Pointe du Diable
CS 10070
29280 Plouzané
--
Aurélien Ponte
Tel: (+33) 2 98 22 40 73
Fax: (+33) 2 98 22 44 96
UMR 6523, IFREMER
ZI de la Pointe du Diable
CS 10070
29280 Plouzané
--
Aurélien Ponte
Tel: (+33) 2 98 22 40 73
Fax: (+33) 2 98 22 44 96
UMR 6523, IFREMER
ZI de la Pointe du Diable
CS 10070
29280 Plouzané
