On Thu, Dec 22, 2016 at 11:54 AM, Sharp Stone <[email protected]> wrote:
> Mat and Satish, > > Thank you for your replies. I'm using Chombo-3.2 + Petsc-3.7.4. I have not > yet received replies from Chombo. So I have to ask you guys to see if my > paths have been correctly set up. When I changed the #include > <petsc-private/pcimpl.h> to #include<petsc/private/pcimpl.h>, I still got > the errors "PetscCompGrid.H:19:34: error: petsc-private/pcimpl.h: No such > file or directory". Highly appreciate your help! > Clearly there was another include. Satish is right that you need to get the right version for Chombo. Matt > On Thu, Dec 22, 2016 at 12:05 PM, Matthew Knepley <[email protected]> > wrote: > >> On Thu, Dec 22, 2016 at 11:01 AM, Sharp Stone <[email protected]> wrote: >> >>> Dear folks, >>> >>> I'm now using Chombo with Petsc solver. When compiling the Chombo >>> examples of Petsc, I always got errors below. I wonder if anyone has such >>> experience to get rid of these. Thanks very much in advance! >>> >>> >>> In file included from PetscCompGrid.cpp:13: >>> PetscCompGrid.H:19:34: error: petsc-private/pcimpl.h: No such file or >>> directory >>> >> >> You might have a version mismatch here. PETSc changed the directory >> structure to conform better to the Linux standard >> >> $PETSC_DIR/include/petsc-private >> >> became >> >> $PETSC_DIR/include/petsc/private >> >> Thanks, >> >> Matt >> >> >>> In file included from PetscCompGrid.cpp:13: >>> PetscCompGrid.H:55: error: ‘Mat’ does not name a type >>> PetscCompGrid.H:60: error: ‘PetscErrorCode’ does not name a type >>> PetscCompGrid.H:62: error: ‘PetscErrorCode’ does not name a type >>> PetscCompGrid.H:63: error: ‘PetscErrorCode’ does not name a type >>> PetscCompGrid.H:66: error: ‘PetscInt’ was not declared in this scope >>> PetscCompGrid.H:66: error: template argument 1 is invalid >>> PetscCompGrid.H:76: error: ‘PetscErrorCode’ does not name a type >>> PetscCompGrid.H:90: error: ‘PetscInt’ was not declared in this scope >>> PetscCompGrid.H:90: error: template argument 1 is invalid >>> PetscCompGrid.H:90: error: template argument 1 is invalid >>> PetscCompGrid.H:90: error: template argument 1 is invalid >>> PetscCompGrid.H:90: error: template argument 1 is invalid >>> PetscCompGrid.H:92: error: ‘PetscInt’ was not declared in this scope >>> PetscCompGrid.H:92: error: template argument 1 is invalid >>> PetscCompGrid.H:92: error: template argument 1 is invalid >>> PetscCompGrid.H:92: error: template argument 1 is invalid >>> PetscCompGrid.H:92: error: template argument 1 is invalid >>> PetscCompGrid.H:93: error: ‘PetscInt’ was not declared in this scope >>> PetscCompGrid.H:93: error: template argument 1 is invalid >>> PetscCompGrid.H:93: error: template argument 1 is invalid >>> PetscCompGrid.H:93: error: template argument 1 is invalid >>> PetscCompGrid.H:93: error: template argument 1 is invalid >>> PetscCompGrid.H:97: error: ‘Mat’ does not name a type >>> PetscCompGrid.H: In constructor ‘PetscCompGrid::PetscCompGrid(int)’: >>> PetscCompGrid.H:35: error: class ‘PetscCompGrid’ does not have any field >>> named ‘m_mat’ >>> PetscCompGrid.H: At global scope: >>> PetscCompGrid.H:138: error: ‘PetscReal’ does not name a type >>> PetscCompGrid.H:140: error: ISO C++ forbids declaration of ‘PetscReal’ >>> with no type >>> PetscCompGrid.H:140: error: expected ‘;’ before ‘*’ token >>> PetscCompGrid.cpp: In destructor ‘virtual CompBC::~CompBC()’: >>> PetscCompGrid.cpp:38: error: ‘m_Rcoefs’ was not declared in this scope >>> PetscCompGrid.cpp:38: error: ‘PetscFree’ was not declared in this scope >>> PetscCompGrid.cpp: In constructor ‘CompBC::CompBC(int, IntVect)’: >>> PetscCompGrid.cpp:41: error: class ‘CompBC’ does not have any field >>> named ‘m_Rcoefs’ >>> PetscCompGrid.cpp: In member function ‘void CompBC::define(int, >>> IntVect)’: >>> PetscCompGrid.cpp:49: error: ‘m_Rcoefs’ was not declared in this scope >>> PetscCompGrid.cpp:49: error: ‘PetscFree’ was not declared in this scope >>> PetscCompGrid.cpp:54: error: ‘PetscReal’ was not declared in this scope >>> PetscCompGrid.cpp:54: error: ‘m_Rcoefs’ was not declared in this scope >>> PetscCompGrid.cpp:54: error: ‘PetscMalloc’ was not declared in this scope >>> PetscCompGrid.cpp: At global scope: >>> PetscCompGrid.cpp:59: error: ‘PetscReal’ does not name a type >>> PetscCompGrid.cpp: In member function ‘virtual void >>> ConstDiriBC::createCoefs()’: >>> PetscCompGrid.cpp:72: error: ‘m_Rcoefs’ was not declared in this scope >>> PetscCompGrid.cpp:77: error: ‘m_Rcoefs’ was not declared in this scope >>> PetscCompGrid.cpp:85: error: ‘m_Rcoefs’ was not declared in this scope >>> PetscCompGrid.cpp:93: error: ‘m_Rcoefs’ was not declared in this scope >>> PetscCompGrid.cpp: In member function ‘virtual void >>> ConstDiriBC::operator()(FArrayBox&, const Box&, const ProblemDomain&, >>> Real, bool)’: >>> PetscCompGrid.cpp:137: error: ‘m_Rcoefs’ was not declared in this scope >>> PetscCompGrid.cpp: In member function ‘virtual void >>> PetscCompGrid::clean()’: >>> PetscCompGrid.cpp:154: error: ‘m_mat’ was not declared in this scope >>> PetscCompGrid.cpp:156: error: ‘MatDestroy’ was not declared in this scope >>> PetscCompGrid.cpp: In member function ‘virtual void >>> PetscCompGrid::define(const ProblemDomain&, Vector<DisjointBoxLayout>&, >>> Vector<int>&, BCHolder, const RealVect&, int, int)’: >>> PetscCompGrid.cpp:218: error: request for member ‘resize’ in >>> ‘((PetscCompGrid*)this)->PetscCompGrid::m_GIDs’, which is of non-class >>> type ‘int’ >>> PetscCompGrid.cpp:219: error: request for member ‘resize’ in >>> ‘((PetscCompGrid*)this)->PetscCompGrid::m_crsSupportGIDs’, which is of >>> non-class type ‘int’ >>> PetscCompGrid.cpp:220: error: request for member ‘resize’ in >>> ‘((PetscCompGrid*)this)->PetscCompGrid::m_fineCoverGIDs’, which is of >>> non-class type ‘int’ >>> PetscCompGrid.cpp:249: error: ‘PetscInt’ was not declared in this scope >>> PetscCompGrid.cpp:249: error: expected `;' before ‘my0’ >>> PetscCompGrid.cpp:256: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:256: error: ‘PetscInt’ cannot appear in a >>> constant-expression >>> PetscCompGrid.cpp:256: error: template argument 1 is invalid >>> PetscCompGrid.cpp:256: error: template argument 1 is invalid >>> PetscCompGrid.cpp:256: error: template argument 1 is invalid >>> PetscCompGrid.cpp:257: error: ‘PetscInt’ cannot appear in a >>> constant-expression >>> PetscCompGrid.cpp:257: error: template argument 1 is invalid >>> PetscCompGrid.cpp:257: error: template argument 1 is invalid >>> PetscCompGrid.cpp:257: error: new initializer expression list treated as >>> compound expression >>> PetscCompGrid.cpp:257: error: cannot convert ‘IntVect’ to ‘int’ in >>> initialization >>> PetscCompGrid.cpp:261: error: ‘PetscInt’ cannot appear in a >>> constant-expression >>> PetscCompGrid.cpp:261: error: template argument 1 is invalid >>> PetscCompGrid.cpp:261: error: invalid type in declaration before ‘=’ >>> token >>> PetscCompGrid.cpp:261: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:262: error: request for member ‘setVal’ in ‘gidfab’, >>> which is of non-class type ‘int’ >>> PetscCompGrid.cpp:276: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:281: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:288: error: ‘PetscInt’ cannot appear in a >>> constant-expression >>> PetscCompGrid.cpp:288: error: template argument 1 is invalid >>> PetscCompGrid.cpp:288: error: invalid type in declaration before ‘=’ >>> token >>> PetscCompGrid.cpp:288: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:295: error: ‘PetscInt’ cannot appear in a >>> constant-expression >>> PetscCompGrid.cpp:295: error: template argument 1 is invalid >>> PetscCompGrid.cpp:295: error: invalid type in declaration before ‘=’ >>> token >>> PetscCompGrid.cpp:295: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:299: error: ‘gidfab’ cannot be used as a function >>> PetscCompGrid.cpp:299: error: ‘my0’ was not declared in this scope >>> PetscCompGrid.cpp:308: error: ‘MPI_Comm’ was not declared in this scope >>> PetscCompGrid.cpp:308: error: expected `;' before ‘wcomm’ >>> PetscCompGrid.cpp:310: error: ‘wcomm’ was not declared in this scope >>> PetscCompGrid.cpp:310: error: ‘m_mat’ was not declared in this scope >>> PetscCompGrid.cpp:310: error: ‘MatCreate’ was not declared in this scope >>> PetscCompGrid.cpp:311: error: ‘my0’ was not declared in this scope >>> PetscCompGrid.cpp:311: error: ‘PETSC_DECIDE’ was not declared in this >>> scope >>> PetscCompGrid.cpp:311: error: ‘MatSetSizes’ was not declared in this >>> scope >>> PetscCompGrid.cpp:312: error: ‘MatSetBlockSize’ was not declared in this >>> scope >>> PetscCompGrid.cpp:313: error: ‘MATAIJ’ was not declared in this scope >>> PetscCompGrid.cpp:313: error: ‘MatSetType’ was not declared in this scope >>> PetscCompGrid.cpp:314: error: ‘MatSetFromOptions’ was not declared in >>> this scope >>> PetscCompGrid.cpp:334: error: ‘PetscInt’ cannot appear in a >>> constant-expression >>> PetscCompGrid.cpp:334: error: template argument 1 is invalid >>> PetscCompGrid.cpp:334: error: invalid type in declaration before ‘=’ >>> token >>> PetscCompGrid.cpp:334: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:338: error: ‘gidfab’ cannot be used as a function >>> PetscCompGrid.cpp:338: error: ‘gidfab’ cannot be used as a function >>> PetscCompGrid.cpp:339: error: ‘gidfab’ cannot be used as a function >>> PetscCompGrid.cpp:342: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:348: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:350: error: ‘PetscInt’ cannot appear in a >>> constant-expression >>> PetscCompGrid.cpp:350: error: template argument 1 is invalid >>> PetscCompGrid.cpp:350: error: template argument 1 is invalid >>> PetscCompGrid.cpp:350: error: invalid type in declaration before ‘;’ >>> token >>> PetscCompGrid.cpp:358: error: ‘PetscInt’ cannot appear in a >>> constant-expression >>> PetscCompGrid.cpp:358: error: template argument 1 is invalid >>> PetscCompGrid.cpp:358: error: template argument 1 is invalid >>> PetscCompGrid.cpp:358: error: new initializer expression list treated as >>> compound expression >>> PetscCompGrid.cpp:358: error: cannot convert ‘const IntVect’ to ‘int’ in >>> initialization >>> PetscCompGrid.cpp:359: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:359: error: ‘PetscInt’ cannot appear in a >>> constant-expression >>> PetscCompGrid.cpp:359: error: template argument 1 is invalid >>> PetscCompGrid.cpp:359: error: template argument 1 is invalid >>> PetscCompGrid.cpp:359: error: template argument 1 is invalid >>> PetscCompGrid.cpp:363: error: ‘PetscInt’ cannot appear in a >>> constant-expression >>> PetscCompGrid.cpp:363: error: template argument 1 is invalid >>> PetscCompGrid.cpp:363: error: invalid type in declaration before ‘=’ >>> token >>> PetscCompGrid.cpp:363: error: no match for ‘operator[]’ in ‘* pl[dit]’ >>> PetscCompGrid.cpp:364: error: request for member ‘setVal’ in ‘gidfab’, >>> which is of non-class type ‘int’ >>> PetscCompGrid.cpp:367: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:367: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:379: error: ‘PetscInt’ cannot appear in a >>> constant-expression >>> PetscCompGrid.cpp:379: error: template argument 1 is invalid >>> PetscCompGrid.cpp:379: error: template argument 1 is invalid >>> PetscCompGrid.cpp:379: error: new initializer expression list treated as >>> compound expression >>> PetscCompGrid.cpp:379: error: cannot convert ‘const IntVect’ to ‘int’ in >>> initialization >>> PetscCompGrid.cpp:380: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:380: error: ‘PetscInt’ cannot appear in a >>> constant-expression >>> PetscCompGrid.cpp:380: error: template argument 1 is invalid >>> PetscCompGrid.cpp:380: error: template argument 1 is invalid >>> PetscCompGrid.cpp:380: error: template argument 1 is invalid >>> PetscCompGrid.cpp:384: error: ‘PetscInt’ cannot appear in a >>> constant-expression >>> PetscCompGrid.cpp:384: error: template argument 1 is invalid >>> PetscCompGrid.cpp:384: error: invalid type in declaration before ‘=’ >>> token >>> PetscCompGrid.cpp:384: error: no match for ‘operator[]’ in ‘* pl[dit]’ >>> PetscCompGrid.cpp:385: error: request for member ‘setVal’ in ‘gidfab’, >>> which is of non-class type ‘int’ >>> PetscCompGrid.cpp:388: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:388: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:394: error: ‘PetscInt’ cannot appear in a >>> constant-expression >>> PetscCompGrid.cpp:394: error: template argument 1 is invalid >>> PetscCompGrid.cpp:394: error: invalid type in declaration before ‘=’ >>> token >>> PetscCompGrid.cpp:394: error: no match for ‘operator[]’ in ‘* pl[dit]’ >>> PetscCompGrid.cpp:398: error: request for member ‘box’ in ‘gidfab’, >>> which is of non-class type ‘int’ >>> PetscCompGrid.cpp: At global scope: >>> PetscCompGrid.cpp:409: error: ‘PetscErrorCode’ does not name a type >>> PetscCompGrid.cpp: In member function ‘virtual void >>> PetscCompGrid::applyBCs(IntVect, int, const DataIndex&, Box, >>> StencilTensor&)’: >>> PetscCompGrid.cpp:611: error: ‘class ConstDiriBC’ has no member named >>> ‘getCoef’ >>> PetscCompGrid.cpp: In member function ‘virtual void >>> PetscCompGrid::InterpToCoarse(IntVect, int, const DataIndex&, >>> StencilTensor&)’: >>> PetscCompGrid.cpp:699: error: ‘PetscInt’ was not declared in this scope >>> PetscCompGrid.cpp:699: error: template argument 1 is invalid >>> PetscCompGrid.cpp:699: error: invalid type in declaration before ‘=’ >>> token >>> PetscCompGrid.cpp:699: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:700: error: ‘PetscInt’ cannot appear in a >>> constant-expression >>> PetscCompGrid.cpp:700: error: template argument 1 is invalid >>> PetscCompGrid.cpp:700: error: invalid type in declaration before ‘=’ >>> token >>> PetscCompGrid.cpp:700: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:709: error: ‘gidfab’ cannot be used as a function >>> PetscCompGrid.cpp:720: error: expected `;' before ‘cidx’ >>> PetscCompGrid.cpp:720: error: ‘cidx’ was not declared in this scope >>> PetscCompGrid.cpp:723: error: ‘kk’ was not declared in this scope >>> PetscCompGrid.cpp:741: error: ‘supgidfab’ cannot be used as a function >>> PetscCompGrid.cpp:743: error: ‘supgidfab’ cannot be used as a function >>> PetscCompGrid.cpp: In member function ‘virtual void >>> PetscCompGrid::InterpToFine(IntVect, int, const DataIndex&, >>> StencilTensor&)’: >>> PetscCompGrid.cpp:772: error: ‘PetscInt’ was not declared in this scope >>> PetscCompGrid.cpp:772: error: template argument 1 is invalid >>> PetscCompGrid.cpp:772: error: invalid type in declaration before ‘=’ >>> token >>> PetscCompGrid.cpp:772: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:773: error: ‘PetscInt’ cannot appear in a >>> constant-expression >>> PetscCompGrid.cpp:773: error: template argument 1 is invalid >>> PetscCompGrid.cpp:773: error: invalid type in declaration before ‘=’ >>> token >>> PetscCompGrid.cpp:773: error: invalid types ‘int[int]’ for array >>> subscript >>> PetscCompGrid.cpp:774: error: request for member ‘box’ in ‘covergidfab’, >>> which is of non-class type ‘int’ >>> PetscCompGrid.cpp:783: error: ‘gidfab’ cannot be used as a function >>> PetscCompGrid.cpp: At global scope: >>> PetscCompGrid.cpp:812: error: ‘PetscErrorCode’ does not name a type >>> PetscCompGrid.cpp:917: error: ‘PetscErrorCode’ does not name a type >>> PetscCompGrid.cpp:964: error: ‘PetscErrorCode’ does not name a type >>> make[3]: *** [o/2d.Linux.64.mpicxx.mpif90.DEBUG.PETSC/PetscCompGrid.o] >>> Error 1 >>> make[2]: *** [AMRElliptic] Error 2 >>> make[1]: *** [AMRElliptic] Error 2 >>> make: *** [execPETSc] Error 2 >>> >>> -- >>> Best regards, >>> >>> Feng >>> >> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> > > > > -- > Best regards, > > Feng > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener
