All right. Thanks Barry! I'll try older versions of PETSc. Merry Christmas to you guys!
On Thu, Dec 22, 2016 at 1:19 PM, Barry Smith <[email protected]> wrote: > > It is very likely the lastest Chombo DOES NOT WORK with the latest > PETSc. You need to try early versions of PETSc with that version of Chombo. > Chombo should have this documented somewhere. > > > > On Dec 22, 2016, at 12:14 PM, Sharp Stone <[email protected]> wrote: > > > > Thanks, Matt! Both libraries are the latest, and I guess they are > compatible except for the path setups. I'm waiting for their reply. > > > > You are right. There's another file that needs to be modified. But the > error can't go away "PetscCompGrid.H:19:34: error: petsc/private/pcimpl.h: > No such file or directory". If you guys have any ideas, please let me know. > > > > Thank you very much! > > > > On Thu, Dec 22, 2016 at 1:07 PM, Matthew Knepley <[email protected]> > wrote: > > On Thu, Dec 22, 2016 at 11:54 AM, Sharp Stone <[email protected]> > wrote: > > Mat and Satish, > > > > Thank you for your replies. I'm using Chombo-3.2 + Petsc-3.7.4. I have > not yet received replies from Chombo. So I have to ask you guys to see if > my paths have been correctly set up. When I changed the #include > <petsc-private/pcimpl.h> to #include<petsc/private/pcimpl.h>, I still got > the errors "PetscCompGrid.H:19:34: error: petsc-private/pcimpl.h: No such > file or directory". Highly appreciate your help! > > > > Clearly there was another include. Satish is right that you need to get > the right version for Chombo. > > > > Matt > > > > On Thu, Dec 22, 2016 at 12:05 PM, Matthew Knepley <[email protected]> > wrote: > > On Thu, Dec 22, 2016 at 11:01 AM, Sharp Stone <[email protected]> > wrote: > > Dear folks, > > > > I'm now using Chombo with Petsc solver. When compiling the Chombo > examples of Petsc, I always got errors below. I wonder if anyone has such > experience to get rid of these. Thanks very much in advance! > > > > > > In file included from PetscCompGrid.cpp:13: > > PetscCompGrid.H:19:34: error: petsc-private/pcimpl.h: No such file or > directory > > > > You might have a version mismatch here. PETSc changed the directory > structure to conform better to the Linux standard > > > > $PETSC_DIR/include/petsc-private > > > > became > > > > $PETSC_DIR/include/petsc/private > > > > Thanks, > > > > Matt > > > > In file included from PetscCompGrid.cpp:13: > > PetscCompGrid.H:55: error: ‘Mat’ does not name a type > > PetscCompGrid.H:60: error: ‘PetscErrorCode’ does not name a type > > PetscCompGrid.H:62: error: ‘PetscErrorCode’ does not name a type > > PetscCompGrid.H:63: error: ‘PetscErrorCode’ does not name a type > > PetscCompGrid.H:66: error: ‘PetscInt’ was not declared in this scope > > PetscCompGrid.H:66: error: template argument 1 is invalid > > PetscCompGrid.H:76: error: ‘PetscErrorCode’ does not name a type > > PetscCompGrid.H:90: error: ‘PetscInt’ was not declared in this scope > > PetscCompGrid.H:90: error: template argument 1 is invalid > > PetscCompGrid.H:90: error: template argument 1 is invalid > > PetscCompGrid.H:90: error: template argument 1 is invalid > > PetscCompGrid.H:90: error: template argument 1 is invalid > > PetscCompGrid.H:92: error: ‘PetscInt’ was not declared in this scope > > PetscCompGrid.H:92: error: template argument 1 is invalid > > PetscCompGrid.H:92: error: template argument 1 is invalid > > PetscCompGrid.H:92: error: template argument 1 is invalid > > PetscCompGrid.H:92: error: template argument 1 is invalid > > PetscCompGrid.H:93: error: ‘PetscInt’ was not declared in this scope > > PetscCompGrid.H:93: error: template argument 1 is invalid > > PetscCompGrid.H:93: error: template argument 1 is invalid > > PetscCompGrid.H:93: error: template argument 1 is invalid > > PetscCompGrid.H:93: error: template argument 1 is invalid > > PetscCompGrid.H:97: error: ‘Mat’ does not name a type > > PetscCompGrid.H: In constructor ‘PetscCompGrid::PetscCompGrid(int)’: > > PetscCompGrid.H:35: error: class ‘PetscCompGrid’ does not have any field > named ‘m_mat’ > > PetscCompGrid.H: At global scope: > > PetscCompGrid.H:138: error: ‘PetscReal’ does not name a type > > PetscCompGrid.H:140: error: ISO C++ forbids declaration of ‘PetscReal’ > with no type > > PetscCompGrid.H:140: error: expected ‘;’ before ‘*’ token > > PetscCompGrid.cpp: In destructor ‘virtual CompBC::~CompBC()’: > > PetscCompGrid.cpp:38: error: ‘m_Rcoefs’ was not declared in this scope > > PetscCompGrid.cpp:38: error: ‘PetscFree’ was not declared in this scope > > PetscCompGrid.cpp: In constructor ‘CompBC::CompBC(int, IntVect)’: > > PetscCompGrid.cpp:41: error: class ‘CompBC’ does not have any field > named ‘m_Rcoefs’ > > PetscCompGrid.cpp: In member function ‘void CompBC::define(int, > IntVect)’: > > PetscCompGrid.cpp:49: error: ‘m_Rcoefs’ was not declared in this scope > > PetscCompGrid.cpp:49: error: ‘PetscFree’ was not declared in this scope > > PetscCompGrid.cpp:54: error: ‘PetscReal’ was not declared in this scope > > PetscCompGrid.cpp:54: error: ‘m_Rcoefs’ was not declared in this scope > > PetscCompGrid.cpp:54: error: ‘PetscMalloc’ was not declared in this scope > > PetscCompGrid.cpp: At global scope: > > PetscCompGrid.cpp:59: error: ‘PetscReal’ does not name a type > > PetscCompGrid.cpp: In member function ‘virtual void > ConstDiriBC::createCoefs()’: > > PetscCompGrid.cpp:72: error: ‘m_Rcoefs’ was not declared in this scope > > PetscCompGrid.cpp:77: error: ‘m_Rcoefs’ was not declared in this scope > > PetscCompGrid.cpp:85: error: ‘m_Rcoefs’ was not declared in this scope > > PetscCompGrid.cpp:93: error: ‘m_Rcoefs’ was not declared in this scope > > PetscCompGrid.cpp: In member function ‘virtual void > ConstDiriBC::operator()(FArrayBox&, const Box&, const ProblemDomain&, > Real, bool)’: > > PetscCompGrid.cpp:137: error: ‘m_Rcoefs’ was not declared in this scope > > PetscCompGrid.cpp: In member function ‘virtual void > PetscCompGrid::clean()’: > > PetscCompGrid.cpp:154: error: ‘m_mat’ was not declared in this scope > > PetscCompGrid.cpp:156: error: ‘MatDestroy’ was not declared in this scope > > PetscCompGrid.cpp: In member function ‘virtual void > PetscCompGrid::define(const ProblemDomain&, Vector<DisjointBoxLayout>&, > Vector<int>&, BCHolder, const RealVect&, int, int)’: > > PetscCompGrid.cpp:218: error: request for member ‘resize’ in > ‘((PetscCompGrid*)this)->PetscCompGrid::m_GIDs’, which is of non-class > type ‘int’ > > PetscCompGrid.cpp:219: error: request for member ‘resize’ in > ‘((PetscCompGrid*)this)->PetscCompGrid::m_crsSupportGIDs’, which is of > non-class type ‘int’ > > PetscCompGrid.cpp:220: error: request for member ‘resize’ in > ‘((PetscCompGrid*)this)->PetscCompGrid::m_fineCoverGIDs’, which is of > non-class type ‘int’ > > PetscCompGrid.cpp:249: error: ‘PetscInt’ was not declared in this scope > > PetscCompGrid.cpp:249: error: expected `;' before ‘my0’ > > PetscCompGrid.cpp:256: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:256: error: ‘PetscInt’ cannot appear in a > constant-expression > > PetscCompGrid.cpp:256: error: template argument 1 is invalid > > PetscCompGrid.cpp:256: error: template argument 1 is invalid > > PetscCompGrid.cpp:256: error: template argument 1 is invalid > > PetscCompGrid.cpp:257: error: ‘PetscInt’ cannot appear in a > constant-expression > > PetscCompGrid.cpp:257: error: template argument 1 is invalid > > PetscCompGrid.cpp:257: error: template argument 1 is invalid > > PetscCompGrid.cpp:257: error: new initializer expression list treated as > compound expression > > PetscCompGrid.cpp:257: error: cannot convert ‘IntVect’ to ‘int’ in > initialization > > PetscCompGrid.cpp:261: error: ‘PetscInt’ cannot appear in a > constant-expression > > PetscCompGrid.cpp:261: error: template argument 1 is invalid > > PetscCompGrid.cpp:261: error: invalid type in declaration before ‘=’ > token > > PetscCompGrid.cpp:261: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:262: error: request for member ‘setVal’ in ‘gidfab’, > which is of non-class type ‘int’ > > PetscCompGrid.cpp:276: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:281: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:288: error: ‘PetscInt’ cannot appear in a > constant-expression > > PetscCompGrid.cpp:288: error: template argument 1 is invalid > > PetscCompGrid.cpp:288: error: invalid type in declaration before ‘=’ > token > > PetscCompGrid.cpp:288: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:295: error: ‘PetscInt’ cannot appear in a > constant-expression > > PetscCompGrid.cpp:295: error: template argument 1 is invalid > > PetscCompGrid.cpp:295: error: invalid type in declaration before ‘=’ > token > > PetscCompGrid.cpp:295: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:299: error: ‘gidfab’ cannot be used as a function > > PetscCompGrid.cpp:299: error: ‘my0’ was not declared in this scope > > PetscCompGrid.cpp:308: error: ‘MPI_Comm’ was not declared in this scope > > PetscCompGrid.cpp:308: error: expected `;' before ‘wcomm’ > > PetscCompGrid.cpp:310: error: ‘wcomm’ was not declared in this scope > > PetscCompGrid.cpp:310: error: ‘m_mat’ was not declared in this scope > > PetscCompGrid.cpp:310: error: ‘MatCreate’ was not declared in this scope > > PetscCompGrid.cpp:311: error: ‘my0’ was not declared in this scope > > PetscCompGrid.cpp:311: error: ‘PETSC_DECIDE’ was not declared in this > scope > > PetscCompGrid.cpp:311: error: ‘MatSetSizes’ was not declared in this > scope > > PetscCompGrid.cpp:312: error: ‘MatSetBlockSize’ was not declared in this > scope > > PetscCompGrid.cpp:313: error: ‘MATAIJ’ was not declared in this scope > > PetscCompGrid.cpp:313: error: ‘MatSetType’ was not declared in this scope > > PetscCompGrid.cpp:314: error: ‘MatSetFromOptions’ was not declared in > this scope > > PetscCompGrid.cpp:334: error: ‘PetscInt’ cannot appear in a > constant-expression > > PetscCompGrid.cpp:334: error: template argument 1 is invalid > > PetscCompGrid.cpp:334: error: invalid type in declaration before ‘=’ > token > > PetscCompGrid.cpp:334: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:338: error: ‘gidfab’ cannot be used as a function > > PetscCompGrid.cpp:338: error: ‘gidfab’ cannot be used as a function > > PetscCompGrid.cpp:339: error: ‘gidfab’ cannot be used as a function > > PetscCompGrid.cpp:342: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:348: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:350: error: ‘PetscInt’ cannot appear in a > constant-expression > > PetscCompGrid.cpp:350: error: template argument 1 is invalid > > PetscCompGrid.cpp:350: error: template argument 1 is invalid > > PetscCompGrid.cpp:350: error: invalid type in declaration before ‘;’ > token > > PetscCompGrid.cpp:358: error: ‘PetscInt’ cannot appear in a > constant-expression > > PetscCompGrid.cpp:358: error: template argument 1 is invalid > > PetscCompGrid.cpp:358: error: template argument 1 is invalid > > PetscCompGrid.cpp:358: error: new initializer expression list treated as > compound expression > > PetscCompGrid.cpp:358: error: cannot convert ‘const IntVect’ to ‘int’ in > initialization > > PetscCompGrid.cpp:359: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:359: error: ‘PetscInt’ cannot appear in a > constant-expression > > PetscCompGrid.cpp:359: error: template argument 1 is invalid > > PetscCompGrid.cpp:359: error: template argument 1 is invalid > > PetscCompGrid.cpp:359: error: template argument 1 is invalid > > PetscCompGrid.cpp:363: error: ‘PetscInt’ cannot appear in a > constant-expression > > PetscCompGrid.cpp:363: error: template argument 1 is invalid > > PetscCompGrid.cpp:363: error: invalid type in declaration before ‘=’ > token > > PetscCompGrid.cpp:363: error: no match for ‘operator[]’ in ‘* pl[dit]’ > > PetscCompGrid.cpp:364: error: request for member ‘setVal’ in ‘gidfab’, > which is of non-class type ‘int’ > > PetscCompGrid.cpp:367: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:367: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:379: error: ‘PetscInt’ cannot appear in a > constant-expression > > PetscCompGrid.cpp:379: error: template argument 1 is invalid > > PetscCompGrid.cpp:379: error: template argument 1 is invalid > > PetscCompGrid.cpp:379: error: new initializer expression list treated as > compound expression > > PetscCompGrid.cpp:379: error: cannot convert ‘const IntVect’ to ‘int’ in > initialization > > PetscCompGrid.cpp:380: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:380: error: ‘PetscInt’ cannot appear in a > constant-expression > > PetscCompGrid.cpp:380: error: template argument 1 is invalid > > PetscCompGrid.cpp:380: error: template argument 1 is invalid > > PetscCompGrid.cpp:380: error: template argument 1 is invalid > > PetscCompGrid.cpp:384: error: ‘PetscInt’ cannot appear in a > constant-expression > > PetscCompGrid.cpp:384: error: template argument 1 is invalid > > PetscCompGrid.cpp:384: error: invalid type in declaration before ‘=’ > token > > PetscCompGrid.cpp:384: error: no match for ‘operator[]’ in ‘* pl[dit]’ > > PetscCompGrid.cpp:385: error: request for member ‘setVal’ in ‘gidfab’, > which is of non-class type ‘int’ > > PetscCompGrid.cpp:388: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:388: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:394: error: ‘PetscInt’ cannot appear in a > constant-expression > > PetscCompGrid.cpp:394: error: template argument 1 is invalid > > PetscCompGrid.cpp:394: error: invalid type in declaration before ‘=’ > token > > PetscCompGrid.cpp:394: error: no match for ‘operator[]’ in ‘* pl[dit]’ > > PetscCompGrid.cpp:398: error: request for member ‘box’ in ‘gidfab’, > which is of non-class type ‘int’ > > PetscCompGrid.cpp: At global scope: > > PetscCompGrid.cpp:409: error: ‘PetscErrorCode’ does not name a type > > PetscCompGrid.cpp: In member function ‘virtual void > PetscCompGrid::applyBCs(IntVect, int, const DataIndex&, Box, > StencilTensor&)’: > > PetscCompGrid.cpp:611: error: ‘class ConstDiriBC’ has no member named > ‘getCoef’ > > PetscCompGrid.cpp: In member function ‘virtual void > PetscCompGrid::InterpToCoarse(IntVect, int, const DataIndex&, > StencilTensor&)’: > > PetscCompGrid.cpp:699: error: ‘PetscInt’ was not declared in this scope > > PetscCompGrid.cpp:699: error: template argument 1 is invalid > > PetscCompGrid.cpp:699: error: invalid type in declaration before ‘=’ > token > > PetscCompGrid.cpp:699: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:700: error: ‘PetscInt’ cannot appear in a > constant-expression > > PetscCompGrid.cpp:700: error: template argument 1 is invalid > > PetscCompGrid.cpp:700: error: invalid type in declaration before ‘=’ > token > > PetscCompGrid.cpp:700: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:709: error: ‘gidfab’ cannot be used as a function > > PetscCompGrid.cpp:720: error: expected `;' before ‘cidx’ > > PetscCompGrid.cpp:720: error: ‘cidx’ was not declared in this scope > > PetscCompGrid.cpp:723: error: ‘kk’ was not declared in this scope > > PetscCompGrid.cpp:741: error: ‘supgidfab’ cannot be used as a function > > PetscCompGrid.cpp:743: error: ‘supgidfab’ cannot be used as a function > > PetscCompGrid.cpp: In member function ‘virtual void > PetscCompGrid::InterpToFine(IntVect, int, const DataIndex&, > StencilTensor&)’: > > PetscCompGrid.cpp:772: error: ‘PetscInt’ was not declared in this scope > > PetscCompGrid.cpp:772: error: template argument 1 is invalid > > PetscCompGrid.cpp:772: error: invalid type in declaration before ‘=’ > token > > PetscCompGrid.cpp:772: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:773: error: ‘PetscInt’ cannot appear in a > constant-expression > > PetscCompGrid.cpp:773: error: template argument 1 is invalid > > PetscCompGrid.cpp:773: error: invalid type in declaration before ‘=’ > token > > PetscCompGrid.cpp:773: error: invalid types ‘int[int]’ for array > subscript > > PetscCompGrid.cpp:774: error: request for member ‘box’ in ‘covergidfab’, > which is of non-class type ‘int’ > > PetscCompGrid.cpp:783: error: ‘gidfab’ cannot be used as a function > > PetscCompGrid.cpp: At global scope: > > PetscCompGrid.cpp:812: error: ‘PetscErrorCode’ does not name a type > > PetscCompGrid.cpp:917: error: ‘PetscErrorCode’ does not name a type > > PetscCompGrid.cpp:964: error: ‘PetscErrorCode’ does not name a type > > make[3]: *** [o/2d.Linux.64.mpicxx.mpif90.DEBUG.PETSC/PetscCompGrid.o] > Error 1 > > make[2]: *** [AMRElliptic] Error 2 > > make[1]: *** [AMRElliptic] Error 2 > > make: *** [execPETSc] Error 2 > > > > -- > > Best regards, > > > > Feng > > > > > > > > -- > > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > > -- Norbert Wiener > > > > > > > > -- > > Best regards, > > > > Feng > > > > > > > > -- > > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > > -- Norbert Wiener > > > > > > > > -- > > Best regards, > > > > Feng > > -- Best regards, Feng
