Matt, The problem must be earlier, because it should be using mpicc for the check, not gcc. The mpi.h is found here by the 3.7.5 config:
Executing: mpicc -E -I/tmp/petsc-JIF0WC/config.setCompilers -I/tmp/petsc-JIF0WC/config.types -I/tmp/petsc-JIF0WC/config.headers -I/opt/intel/compilers_and_libraries_2017.1.132/linux/mpi/include -I/opt/intel/compilers_and_libraries_2017.1.132/linux/mpi/intel64/include /tmp/petsc-JIF0WC/config.headers/conftest.c stdout: # 1 "/tmp/petsc-JIF0WC/config.headers/conftest.c" # 1 "/tmp/petsc-JIF0WC/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-JIF0WC/config.headers/conftest.c" 2 # 1 "/tmp/petsc-JIF0WC/config.headers/conffix.h" 1 # 3 "/tmp/petsc-JIF0WC/config.headers/conftest.c" 2 # 1 "/opt/intel/compilers_and_libraries_2017.1.132/linux/mpi/intel64/include/mpi.h" 1 Note that the machine and ENV are exactly the same, the only change is 3.7.5 versus 3.8.3. Chris dr. ir. Christiaan Klaij | Senior Researcher | Research & Development MARIN | T +31 317 49 33 44 | [email protected]<mailto:[email protected]> | www.marin.nl<http://www.marin.nl> [LinkedIn]<https://www.linkedin.com/company/marin> [YouTube] <http://www.youtube.com/marinmultimedia> [Twitter] <https://twitter.com/MARIN_nieuws> [Facebook] <https://www.facebook.com/marin.wageningen> MARIN news: Office tool aNySIM integrated into real-time onboard software<http://www.marin.nl/web/News/News-items/Office-tool-aNySIM-integrated-into-realtime-onboard-software-1.htm> ________________________________ From: Matthew Knepley <[email protected]> Sent: Thursday, March 22, 2018 1:27 PM To: Klaij, Christiaan Cc: [email protected] Subject: Re: [petsc-users] problem configuring 3.8.3 with intel mpi On Thu, Mar 22, 2018 at 8:00 AM, Klaij, Christiaan <[email protected]<mailto:[email protected]>> wrote: Satish, I'm trying to upgrade from 3.7.5 to 3.8.3. The first problem is that my intel mpi installation, which works for 3.7.5, fails with 3.8.3, see the attached logs. It seems that the mpi compilers are not found anymore. Any ideas? The header check failed: Checking include with compiler flags var CPPFLAGS ['/opt/intel/compilers_and_libraries_2017.1.132/linux/mpi/include'] Executing: gcc -E -I/tmp/petsc-8GlPlN/config.setCompilers -I/tmp/petsc-8GlPlN/config.types -I/tmp/petsc-8GlPlN/config.headers -I/opt/intel/compilers_and_libraries_2017.1.132/linux/mpi/include /tmp/petsc-8GlPlN/config.headers/conftest.c stdout: # 1 "/tmp/petsc-8GlPlN/config.headers/conftest.c" # 1 "<built-in>" # 1 "<command-line>" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "<command-line>" 2 # 1 "/tmp/petsc-8GlPlN/config.headers/conftest.c" # 1 "/tmp/petsc-8GlPlN/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8GlPlN/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8GlPlN/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8GlPlN/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-8GlPlN/config.headers/conftest.c" # 1 "<built-in>" # 1 "<command-line>" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "<command-line>" 2 # 1 "/tmp/petsc-8GlPlN/config.headers/conftest.c" # 1 "/tmp/petsc-8GlPlN/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-8GlPlN/config.headers/conftest.c" 2 # 1 "/tmp/petsc-8GlPlN/config.headers/conffix.h" 1 # 3 "/tmp/petsc-8GlPlN/config.headers/conftest.c" 2stderr: /tmp/petsc-8GlPlN/config.headers/conftest.c:3:17: fatal error: mpi.h: No such file or directory #include <mpi.h> ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include <mpi.h> Preprocess stderr before filtering:/tmp/petsc-8GlPlN/config.headers/conftest.c:3:17: fatal error: mpi.h: No such file or directory #include <mpi.h> Where are the headers? Thanks, Matt Chris dr. ir. Christiaan Klaij | Senior Researcher | Research & Development MARIN | T +31 317 49 33 44 | mailto:[email protected]<mailto:[email protected]> | http://www.marin.nl MARIN news: http://www.marin.nl/web/News/News-items/Office-tool-aNySIM-integrated-into-realtime-onboard-software-1.htm -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener https://www.cse.buffalo.edu/~knepley/<http://www.caam.rice.edu/~mk51/>
