As you mention in [4], the proximate cause of the configure failure is this
link error [8]:
Naively, that looks like a problem to be resolved at the level of the C++
compiler and MPI.
Unless there are wrinkles of this build process that I don't understand
(likely), this [6] looks non-standard to me:
includedir="${prefix}/include"
...
./configure --prefix=${prefix} \
...
-with-mpi-include="${includedir}" \
...
Is it possible to configure using --with-mpi-dir, instead of the separate
--with-mpi-include and --with-mpi-lib commands?
As an aside, maybe Satish can say more, but I'm not sure if it's advisable to
override variables in the make command [7].
[8]
https://gist.github.com/jkozdon/c161fb15f2df23c3fbc0a5a095887ef8#file-configure-log-L7795
[6]
https://gist.github.com/jkozdon/c161fb15f2df23c3fbc0a5a095887ef8#file-build_tarballs-jl-L45
[7]
https://gist.github.com/jkozdon/c161fb15f2df23c3fbc0a5a095887ef8#file-build_tarballs-jl-L55
> Am 02.07.2021 um 06:25 schrieb Kozdon, Jeremy (CIV) <[email protected]>:
>
> I have been talking with Boris Kaus and Patrick Sanan about trying to revive
> the Julia PETSc interface wrappers. One of the first things to get going is
> to use Julia's binary builder [1] to wrap more scalar, real, and int type
> builds of the PETSc library; the current distribution is just Real, double,
> Int32. I've been working on a PR for this [2] but have been running into some
> build issues on some architectures [3].
>
> I doubt that anyone here is an expert with Julia's binary builder system, but
> I was wondering if anyone who is better with the PETSc build system can see
> anything obvious from the configure.log [4] that might help me sort out
> what's going on.
>
> This exact script worked on 2020-08-20 [5] to build the libraries, se
> something has obviously changed with either the Julia build system and/or one
> (or more!) of the dependency binaries.
>
> For those that don't know, Julia's binary builder system essentially allows
> users to download binaries directly from the web for any system that the
> Julia Programing language distributes binaries for. So a (desktop) user can
> get MPI, PETSc, etc. without the headache of having to build anything from
> scratch; obviously on clusters you would still want to use system MPIs and
> what not.
>
> ----
>
> [1] https://github.com/JuliaPackaging/BinaryBuilder.jl
> [2] https://github.com/JuliaPackaging/Yggdrasil/pull/3249
> [3]
> https://github.com/JuliaPackaging/Yggdrasil/pull/3249#issuecomment-872698681
> [4]
> https://gist.github.com/jkozdon/c161fb15f2df23c3fbc0a5a095887ef8#file-configure-log
> [5]
> https://github.com/JuliaBinaryWrappers/PETSc_jll.jl/releases/tag/PETSc-v3.13.4%2B0
