Patrick Should this be fixed in PETSc build system? https://github.com/JuliaPackaging/Yggdrasil/blob/master/P/PETSc/bundled/patches/petsc_name_mangle.patch
> On Jul 2, 2021, at 9:05 AM, Patrick Sanan <[email protected]> wrote: > > As you mention in [4], the proximate cause of the configure failure is this > link error [8]: > > Naively, that looks like a problem to be resolved at the level of the C++ > compiler and MPI. > > Unless there are wrinkles of this build process that I don't understand > (likely), this [6] looks non-standard to me: > > includedir="${prefix}/include" > ... > ./configure --prefix=${prefix} \ > ... > -with-mpi-include="${includedir}" \ > ... > > > Is it possible to configure using --with-mpi-dir, instead of the separate > --with-mpi-include and --with-mpi-lib commands? > > > As an aside, maybe Satish can say more, but I'm not sure if it's advisable to > override variables in the make command [7]. > > [8] > https://gist.github.com/jkozdon/c161fb15f2df23c3fbc0a5a095887ef8#file-configure-log-L7795 > [6] > https://gist.github.com/jkozdon/c161fb15f2df23c3fbc0a5a095887ef8#file-build_tarballs-jl-L45 > [7] > https://gist.github.com/jkozdon/c161fb15f2df23c3fbc0a5a095887ef8#file-build_tarballs-jl-L55 > > >> Am 02.07.2021 um 06:25 schrieb Kozdon, Jeremy (CIV) <[email protected]>: >> >> I have been talking with Boris Kaus and Patrick Sanan about trying to revive >> the Julia PETSc interface wrappers. One of the first things to get going is >> to use Julia's binary builder [1] to wrap more scalar, real, and int type >> builds of the PETSc library; the current distribution is just Real, double, >> Int32. I've been working on a PR for this [2] but have been running into >> some build issues on some architectures [3]. >> >> I doubt that anyone here is an expert with Julia's binary builder system, >> but I was wondering if anyone who is better with the PETSc build system can >> see anything obvious from the configure.log [4] that might help me sort out >> what's going on. >> >> This exact script worked on 2020-08-20 [5] to build the libraries, se >> something has obviously changed with either the Julia build system and/or >> one (or more!) of the dependency binaries. >> >> For those that don't know, Julia's binary builder system essentially allows >> users to download binaries directly from the web for any system that the >> Julia Programing language distributes binaries for. So a (desktop) user can >> get MPI, PETSc, etc. without the headache of having to build anything from >> scratch; obviously on clusters you would still want to use system MPIs and >> what not. >> >> ---- >> >> [1] https://github.com/JuliaPackaging/BinaryBuilder.jl >> [2] https://github.com/JuliaPackaging/Yggdrasil/pull/3249 >> [3] >> https://github.com/JuliaPackaging/Yggdrasil/pull/3249#issuecomment-872698681 >> [4] >> https://gist.github.com/jkozdon/c161fb15f2df23c3fbc0a5a095887ef8#file-configure-log >> [5] >> https://github.com/JuliaBinaryWrappers/PETSc_jll.jl/releases/tag/PETSc-v3.13.4%2B0 >
