Hi Satish,
That's a bit strange since I have already use export
PETSC_DIR=/home/danyangs/soft/petsc/petsc-3.18.3.
Yes, I have petsc 3.13.6 installed and has PETSC_DIR set in the bashrc
file. After changing PETSC_DIR in the bashrc file, PETSc can be compiled
now.
Thanks,
Danyang
On 2023-01-19 3:58 p.m., Satish Balay wrote:
/home/danyangs/soft/petsc/petsc-3.13.6/src/sys/makefile contains a directory
not on the filesystem: ['\\']
Its strange that its complaining about petsc-3.13.6. Do you have this location
set in your .bashrc or similar file - that's getting sourced during the build?
Perhaps you could start with a fresh copy of petsc and retry?
Also suggest using 'arch-' prefix for PETSC_ARCH i.e
'arch-intel-14.0.2-openmpi-1.6.5' - just in case there are some bugs lurking
with skipping build files in this location
Satish
On Thu, 19 Jan 2023, Danyang Su wrote:
Hi Barry and Satish,
I guess there is compatibility problem with some external package. The latest
CMake complains about the compiler, so I remove superlu_dist option since I
rarely use it. Then the HYPRE package shows "Error: Hypre requires C++
compiler. None specified", which is a bit tricky since c++ compiler is
specified in the configuration so I comment the related error code in hypre.py
during configuration. After doing this, there is no error during PETSc
configuration but new error occurs during make process.
**************************ERROR*************************************
Error during compile, check
intel-14.0.2-openmpi-1.6.5/lib/petsc/conf/make.log
Send it and intel-14.0.2-openmpi-1.6.5/lib/petsc/conf/configure.log to
[email protected]
********************************************************************
It might be not worth checking this problem since most of the users do not
work on such old cluster. Both log files are attached in case any developer
wants to check. Please let me know if there is any suggestions and I am
willing to make a test.
Thanks,
Danyang
On 2023-01-19 11:18 a.m., Satish Balay wrote:
BTW: cmake is required by superlu-dist not petsc.
And its possible that petsc might not build with this old version of openmpi
- [and/or the externalpackages that you are installing - might not build
with this old version of intel compilers].
Satish
On Thu, 19 Jan 2023, Barry Smith wrote:
Remove
--download-cmake=/home/danyangs/soft/petsc/petsc-3.18.3/packages/cmake-3.25.1.tar.gz
and install CMake yourself. Then configure PETSc with
--with-cmake=directory you installed it in.
Barry
On Jan 19, 2023, at 1:46 PM, Danyang Su <[email protected]> wrote:
Hi All,
I am trying to install the latest PETSc on an old cluster but always get
some error information at the step of cmake. The system installed cmake is
V3.2.3, which is out-of-date for PETSc. I tried to use --download-cmake
first, it does not work. Then I tried to clean everything (delete the
petsc_arch folder), download the latest cmake myself and pass the path to
the configuration, the error is still there.
The compiler there is a bit old, intel-14.0.2 and openmpi-1.6.5. I have no
problem to install PETSc-3.13.6 there. The latest version cannot pass
configuration, unfortunately. Attached is the last configuration I have
tried.
--with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90
--download-cmake=/home/danyangs/soft/petsc/petsc-3.18.3/packages/cmake-3.25.1.tar.gz
--download-mumps --download-scalapack --download-parmetis --download-metis
--download-ptscotch --download-fblaslapack --download-hypre
--download-superlu_dist --download-hdf5=yes --with-hdf5-fortran-bindings
--with-debugging=0 COPTFLAGS="-O2 -march=native -mtune=native"
CXXOPTFLAGS="-O2 -march=native -mtune=native" FOPTFLAGS="-O2 -march=native
-mtune=native"
Is there any solution for this.
Thanks,
Danyang
<configure.log>
