Looks like .bashrc is getting sourced again during the build process [as make creates new bash shell during the build] - thus overriding the env variable that's set.
Glad you have a working build now. Thanks for the update! BTW: superlu-dist requires cmake 3.18.1 or higher. You could check if this older version of cmake builds on this cluster [if you want to give superlu-dist a try again] Satish On Thu, 19 Jan 2023, Danyang Su wrote: > Hi Satish, > > That's a bit strange since I have already use export > PETSC_DIR=/home/danyangs/soft/petsc/petsc-3.18.3. > > Yes, I have petsc 3.13.6 installed and has PETSC_DIR set in the bashrc file. > After changing PETSC_DIR in the bashrc file, PETSc can be compiled now. > > Thanks, > > Danyang > > On 2023-01-19 3:58 p.m., Satish Balay wrote: > >> /home/danyangs/soft/petsc/petsc-3.13.6/src/sys/makefile contains a > >> directory not on the filesystem: ['\\'] > > > > Its strange that its complaining about petsc-3.13.6. Do you have this > > location set in your .bashrc or similar file - that's getting sourced during > > the build? > > > > Perhaps you could start with a fresh copy of petsc and retry? > > > > Also suggest using 'arch-' prefix for PETSC_ARCH i.e > > 'arch-intel-14.0.2-openmpi-1.6.5' - just in case there are some bugs lurking > > with skipping build files in this location > > > > Satish > > > > > > On Thu, 19 Jan 2023, Danyang Su wrote: > > > >> Hi Barry and Satish, > >> > >> I guess there is compatibility problem with some external package. The > >> latest > >> CMake complains about the compiler, so I remove superlu_dist option since I > >> rarely use it. Then the HYPRE package shows "Error: Hypre requires C++ > >> compiler. None specified", which is a bit tricky since c++ compiler is > >> specified in the configuration so I comment the related error code in > >> hypre.py > >> during configuration. After doing this, there is no error during PETSc > >> configuration but new error occurs during make process. > >> > >> **************************ERROR************************************* > >> Error during compile, check > >> intel-14.0.2-openmpi-1.6.5/lib/petsc/conf/make.log > >> Send it and intel-14.0.2-openmpi-1.6.5/lib/petsc/conf/configure.log to > >> petsc-ma...@mcs.anl.gov > >> ******************************************************************** > >> > >> It might be not worth checking this problem since most of the users do not > >> work on such old cluster. Both log files are attached in case any developer > >> wants to check. Please let me know if there is any suggestions and I am > >> willing to make a test. > >> > >> Thanks, > >> > >> Danyang > >> > >> On 2023-01-19 11:18 a.m., Satish Balay wrote: > >>> BTW: cmake is required by superlu-dist not petsc. > >>> > >>> And its possible that petsc might not build with this old version of > >>> openmpi > >>> - [and/or the externalpackages that you are installing - might not build > >>> with this old version of intel compilers]. > >>> > >>> Satish > >>> > >>> On Thu, 19 Jan 2023, Barry Smith wrote: > >>> > >>>> Remove > >>>> > >>>> --download-cmake=/home/danyangs/soft/petsc/petsc-3.18.3/packages/cmake-3.25.1.tar.gz > >>>> and install CMake yourself. Then configure PETSc with > >>>> --with-cmake=directory you installed it in. > >>>> > >>>> Barry > >>>> > >>>> > >>>>> On Jan 19, 2023, at 1:46 PM, Danyang Su <danyang...@gmail.com> wrote: > >>>>> > >>>>> Hi All, > >>>>> > >>>>> I am trying to install the latest PETSc on an old cluster but always get > >>>>> some error information at the step of cmake. The system installed cmake > >>>>> is > >>>>> V3.2.3, which is out-of-date for PETSc. I tried to use --download-cmake > >>>>> first, it does not work. Then I tried to clean everything (delete the > >>>>> petsc_arch folder), download the latest cmake myself and pass the path > >>>>> to > >>>>> the configuration, the error is still there. > >>>>> > >>>>> The compiler there is a bit old, intel-14.0.2 and openmpi-1.6.5. I have > >>>>> no > >>>>> problem to install PETSc-3.13.6 there. The latest version cannot pass > >>>>> configuration, unfortunately. Attached is the last configuration I have > >>>>> tried. > >>>>> > >>>>> --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 > >>>>> --download-cmake=/home/danyangs/soft/petsc/petsc-3.18.3/packages/cmake-3.25.1.tar.gz > >>>>> --download-mumps --download-scalapack --download-parmetis > >>>>> --download-metis > >>>>> --download-ptscotch --download-fblaslapack --download-hypre > >>>>> --download-superlu_dist --download-hdf5=yes --with-hdf5-fortran-bindings > >>>>> --with-debugging=0 COPTFLAGS="-O2 -march=native -mtune=native" > >>>>> CXXOPTFLAGS="-O2 -march=native -mtune=native" FOPTFLAGS="-O2 > >>>>> -march=native > >>>>> -mtune=native" > >>>>> > >>>>> Is there any solution for this. > >>>>> > >>>>> Thanks, > >>>>> > >>>>> Danyang > >>>>> > >>>>> > >>>>> <configure.log> >