>>>
Executing: mpifort -o /tmp/petsc-nopi85m9/config.compilers/conftest -v
-KPIC -O2 -g /tmp/petsc-nopi85m9/config.compilers/conftest.o
stdout:
Export
NVCOMPILER=/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7
Export PGI=/software/sse2/tetralith_el9/manual/nvhpc/23.7
/software/sse2/generic/manual/ssetools/v1.9.5/wrappers/ld /usr/lib64/crt1.o
/usr/lib64/crti.o
/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/compilers/lib/trace_init.o
/usr/lib/gcc/x86_64-redhat-linux/11//crtbegin.o
/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/compilers/lib/f90main.o
--eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -T
/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/compilers/lib/nvhpc.ld
-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/mpi/lib
-L/software/sse2/tetralith_el9/manual/FFTW/3.3.10/nv23.7/hpc1/lib
-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/nvshmem/lib
-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/nccl/lib
-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/mpi/lib
-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/math_libs/lib64
-L/softwa
re/sse2/
tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/compilers/lib
-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/compilers/extras/qd/lib
-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/cuda/extras/CUPTI/lib64
-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/cuda/lib64
-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/compilers/lib
-L/usr/lib64 -L/usr/lib/gcc/x86_64-redhat-linux/11/
/tmp/petsc-nopi85m9/config.compilers/conftest.o -rpath
/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/mpi/lib
-lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -rpath
/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/compilers/lib
-o /tmp/petsc-nopi85m9/config.compilers/conftest
-L/usr/lib/gcc/x86_64-redhat-linux/11//../../../../lib64 -lnvf -lnvomp -ldl
--as-needed -lnvhpcatm -latomic --no-as-needed -lpthread -lnvcpumath -lnsnvc
-lnvc -lrt -lpthread -lgcc -lc -lgcc_s -lm /usr/
lib/gcc/
x86_64-redhat-linux/11//crtend.o /usr/lib64/crtn.o
compilers: Libraries needed to link Fortran code with the C linker:
['-Wl,-rpath,/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/mpi/lib',
'-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/mpi/lib',
'-Wl,-rpath,/software/sse2/tetralith_el9/manual/FFTW/3.3.10/nv23.7/hpc1/lib',
'-L/software/sse2/tetralith_el9/manual/FFTW/3.3.10/nv23.7/hpc1/lib',
'-Wl,-rpath,/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/nvshmem/lib',
'-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/nvshmem/lib',
'-Wl,-rpath,/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/nccl/lib',
'-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/nccl/lib',
'-Wl,-rpath,/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/math_libs/lib64',
'-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/math_libs/lib64',
'-Wl,-rpath,/softw
are/sse2
/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/compilers/lib',
'-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/compilers/lib',
'-Wl,-rpath,/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/compilers/extras/qd/lib',
'-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/compilers/extras/qd/lib',
'-Wl,-rpath,/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/cuda/extras/CUPTI/lib64',
'-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/cuda/extras/CUPTI/lib64',
'-Wl,-rpath,/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/cuda/lib64',
'-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/cuda/lib64',
'-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/11',
'-L/usr/lib/gcc/x86_64-redhat-linux/11',
'-Wl,-rpath,/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/mpi/lib',
'-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi',
'-Wl,-rpath,/so
ftware/s
se2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/compilers/lib', '-lnvf',
'-lnvomp', '-ldl', '-lnvhpcatm', '-latomic', '-lpthread', '-lnvcpumath',
'-lnsnvc', '-lnvc', '-lrt', '-lgcc_s', '-lm']
PETSC_WITH_EXTERNAL_LIB =
-Wl,-rpath,/proj/nsc/users/bramkamp/petsc_install/petsc_barry_fix_nvclib_no_cuda/lib
-L/proj/nsc/users/bramkamp/petsc_install/petsc_barry_fix_nvclib_no_cuda/lib
-Wl,-rpath,/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/mpi/lib
-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/mpi/lib
-Wl,-rpath,/software/sse2/tetralith_el9/manual/FFTW/3.3.10/nv23.7/hpc1/lib
-L/software/sse2/tetralith_el9/manual/FFTW/3.3.10/nv23.7/hpc1/lib
-Wl,-rpath,/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/nvshmem/lib
-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/nvshmem/lib
-Wl,-rpath,/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/nccl/lib
-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/comm_libs/nccl/lib
-Wl,-rpath,/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/math_libs/lib64
-L/software/sse2/tetral
ith_el9/
manual/nvhpc/23.7/Linux_x86_64/23.7/math_libs/lib64
-Wl,-rpath,/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/compilers/lib
-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/compilers/lib
-Wl,-rpath,/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/compilers/extras/qd/lib
-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/compilers/extras/qd/lib
-Wl,-rpath,/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/cuda/extras/CUPTI/lib64
-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/cuda/extras/CUPTI/lib64
-Wl,-rpath,/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/cuda/lib64
-L/software/sse2/tetralith_el9/manual/nvhpc/23.7/Linux_x86_64/23.7/cuda/lib64
-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/11
-L/usr/lib/gcc/x86_64-redhat-linux/11 -lpetsc -lflapack -lfblas -lX11
-lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lnvf -lnvomp -ldl
-lnvhpcatm -latomic -lpth
read -ln
vcpumath -lnsnvc -lnvc -lrt -lgcc_s -lm -lstdc++ -lquadmath
<<<
You'll probably want to skip lot more than just -lnvc
Try the following and see if it works
--with-cudac=0 LIBS="-lmpi_mpifh -lnvf -lstdc++"
[or specify the correct list of libraries for the fortran MPI/Compiler
libraries - with dependencies - as needed]
Satish
On Fri, 5 Apr 2024, Frank Bramkamp wrote:
> Dear Barry, I tried your fix for -lnvc. Unfortunately it did not work so far.
> Here I send you the configure. log file again. One can see that you try to
> skip something, but later it still always includes -lnvc for the linker. In
> the
> file petscvariables
> ZjQcmQRYFpfptBannerStart
> This Message Is From an External Sender
> This message came from outside your organization.
>
> ZjQcmQRYFpfptBannerEnd
>
> Dear Barry,
>
> I tried your fix for -lnvc. Unfortunately it did not work so far.
> Here I send you the configure.log file again.
>
> One can see that you try to skip something, but later it still always
> includes -lnvc for the linker.
> In the file petscvariables it also appears as before.
>
> As I see it, it lists the linker options including -lnvc also before you try
> to skip it.
> Maybe it is already in the linker options before the skipping.
>
>
> Greetings, Frank
>
>
>
>
