Dear Petsc Development Team, I am encountering an issue while trying to build Petsc library in our Cray Cluster. Despite loading appropriate gcc and cray-mpich modules and successfully configuring Petsc, I receive the following error (see A1). I have also attached petsc configure statement (see A2) and snippet of configure log (see A3).
Could you please provide assistance in resolving this build issue? Any insights or additional steps I might take to diagnose and fix the problem would be greatly appreciated. Thank you for your support Regards, Pradeep *A1.Error from make.log:* ========================================== /usr/bin/gmake --print-directory -f gmakefile -j88 -l272.0 --output-sync=recurse V= libs gmake[3]: *** No rule to make target '/$NETWORK$/users/$USERNAME$/NumLib/petsc-3.21.1/src/sys/f90-mod/petscsysmod.F90', needed by 'gnu-opt/obj/src/sys/f90-mod/petscsysmod.o'. Stop. gmake[2]: *** [/users/$USERNAME$/NumLib/petsc-3.21.1/lib/petsc/conf/ rules_doc.mk:5: libs] Error 2 **************************ERROR************************************* Error during compile, check gnu-opt/lib/petsc/conf/make.log Send it and gnu-opt/lib/petsc/conf/configure.log to [email protected] ******************************************************************** Finishing make run at Thu, 13 Jun 2024 11:42:44 -0600 *A2.Configure Statement:* ./configure --with-scalar-type=real --with-precision=double --download-metis=$metis_path --download-metis-use-doubleprecision=1 --download-parmetis=$parmetis_path --with-cmake=1 --with-mpi-dir=$MPI_DIR --download-fblaslapack=$fblaslapack_path --with-debugging=0 *COPTFLAGS*=-O2 *FOPTFLAGS*=-O2 *Where the paths are defined:* *fblaslapack_path* ="/users/$USERNAME$/NumLib/ExternalPackages/petsc-pkg-fblaslapack-e8a03f57d64c.tar.gz" *metis_path* ="/users/$USERNAME$/NumLib/ExternalPackages/petsc-pkg-metis-69fb26dd0428.tar.gz" *parmetis_path* ="/users/$USERNAME$/NumLib/ExternalPackages/petsc-pkg-parmetis-f5e3aab04fd5.tar.gz" *MPI_DIR*=${CRAY_MPICH_PREFIX} *A3. Snippets From configure.log:* --------------------------------------------------------------------------------------------- PETSc: Build : Set default architecture to gnu-opt in lib/petsc/conf/petscvariables File creation : Created gnu-opt/lib/petsc/conf/reconfigure-gnu-opt.py for automatic reconfiguration Framework: RDict update : Substitutions were stored in RDict with parent None File creation : Created makefile configure header gnu-opt/lib/petsc/conf/petscvariables File creation : Created makefile configure header gnu-opt/lib/petsc/conf/petscrules File creation : Created configure header gnu-opt/include/petscconf.h File creation : Created C specific configure header gnu-opt/include/petscfix.h File creation : Created configure pkg header gnu-opt/include/petscpkg_version.h Compilers: C Compiler: /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -O2 Version: gcc (GCC) 12.2.0 20220819 (HPE) C++ Compiler: /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/bin/mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O -std=gnu++20 -fPIC Version: g++ (GCC) 12.2.0 20220819 (HPE) Fortran Compiler: /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/bin/mpif90 -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -O2 Version: GNU Fortran (GCC) 12.2.0 20220819 (HPE) Linkers: Shared linker: /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/bin/mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -O2 Dynamic linker: /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/bin/mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -O2 Libraries linked against: -lquadmath -ldl BlasLapack: Libraries: -Wl,-rpath,/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/lib -L/users/$USERNAME$ /NumLib/petsc-3.21.1/gnu-opt/lib -lflapack -lfblas uses 4 byte integers MPI: Version: 3 Includes: -I/opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/include mpiexec: /bin/false Implementation: mpich3 MPICH_NUMVERSION: 30400002 X: Libraries: -lX11 python: Executable: /usr/bin/python3 pthread: Libraries: -lpthread cmake: Version: 3.23.1 Executable: /usr/projects/hpcsoft/tce/23-03/cray-sles15-x86_64_v3-slingshot-none/packages/cmake/cmake-3.23.1/bin/cmake fblaslapack: metis: Version: 5.1.0 Includes: -I/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/include Libraries: -Wl,-rpath,/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/lib -L/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/lib -lmetis parmetis: Version: 4.0.3 Includes: -I/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/include Libraries: -Wl,-rpath,/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/lib -L/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/lib -lparmetis regex: bison: Version: 3.0 Executable: /usr/bin/bison PETSc: Language used to compile PETSc: C PETSC_ARCH: gnu-opt PETSC_DIR: /users/$USERNAME$/NumLib/petsc-3.21.1 Prefix: <inplace installation> Scalar type: real Precision: double Support for __float128 Integer size: 4 bytes Single library: yes Shared libraries: yes Memory alignment from malloc(): 16 bytes Using GNU make: /usr/bin/gmake xxx=======================================================================================xxx Configure stage complete. Now build PETSc libraries with: make PETSC_DIR=/users/$USERNAME$/NumLib/petsc-3.21.1 PETSC_ARCH=gnu-opt all xxx=======================================================================================xxx ================================================================================ Finishing configure run at Thu, 13 Jun 2024 11:42:35 -0600
